Actinomyces graevenitzii: M3I41_08140
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Entry
M3I41_08140 CDS
T08387
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agh
Actinomyces graevenitzii
Pathway
agh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M3I41_08140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agh03400
]
M3I41_08140 (mfd)
Enzymes [BR:
agh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M3I41_08140 (mfd)
DNA repair and recombination proteins [BR:
agh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M3I41_08140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
VBS_C3G9
MFD_D3
AAA_22
T1R_D3-like
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
UQF79538
UniProt:
A0A9E7AFA7
LinkDB
All DBs
Position
complement(1891860..1895477)
Genome browser
AA seq
1205 aa
AA seq
DB search
MRLKALLDVLAQNSAVSQVINLASSRVRTDYTAAVVPGVRPALLAAMALGKVGLDAVRPQ
VNHPLLVVCATTREAEEMVAALRCYLPDEAVEMLPAWETLPHERLSPRADTVAARLAVLR
RLAHSEEGAIGVLVVPVRALLAPVIAGLGEIEPLTLSAGAELPLEAATERLVKMAYTRVD
MVENRGEFAVRGGILDVFPPTCPRPVRVDYFGDEIDEISSFAVSDQRSIEVLKAPVVVTA
CRELLLNDVVRERAAALVTKIPGAADLLEKLAEGIYVEGMESLAPVLVDKMVPLLELTGQ
RLTVISEPERVRRRAEDLAATTQEFLAAAWTSAASGGQVPVDLSAAAFAHLADVRQLSLA
KGLGWWSFNAFASAPDMPSLPITEVPGYGGGFEAAARQVGQQAKAGWRVVISAEGPGPAR
RLAEVLGEGDIPARIVADLDEAADLGASDGSGDGVVRILPASAYQSFLIPSQKFAFIGQS
QITGRASASPRAPKAVPARRSKRSVDPLSLHPGDLVVHSHHGVGRFVELTRRPVPGNRNS
SREYLVIEYAPSKRGQPADRLMVPTDSLDAVSKYVGGDAPALSKMGGADWQKTKAKARKA
VREIAGELVRLYAARQAAKGHAFSPDTPWQAELEQSFAYTETPDQLVTIDEVKADMEKSA
PMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHAETFTERFAGFPVTV
AQLSRFQSAKESQQVLRDLEQGRIDVVVGTHRLLTGSVKFKDLGLVIIDEEQRFGVEHKE
ALKAMRTDVDVLSMSATPIPRTLEMAVSGLREMSTLATPPEDRHPILTYVGPYETKQVGA
AIRRELLREGQVFYVHNKVEDIDAVAARLTELVPEANIATAHGQMSEHRLEKVIDAFWKR
EIDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYPGDK
PLTETAHQRLRTIANNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMVG
DAVEAYKRGVGLGEDEEAAEPDLKVELPIDANIPEEYLPHERLRLEAYAKMAAAKSDSDV
DDVLAELADRYGPVPEPTQNLAQLARLRVYAASLGVYEIVAQGKSIRFAPVALPESGAMR
VKRLYPGTIIKPATRTLVVPAPGTRGLRRETLSASELLRWAQVFLHAVVAGEAEYETEAT
KYRSR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctgaaggccctgctcgatgttttagctcaaaattctgcggtttcacaggtcatt
aacctggccagctcacgtgtacgtaccgactacacggcggcggttgtgcccggggtgcgc
ccggccctactggctgcaatggccctgggtaaggtgggtttagacgccgtcaggccgcaa
gtaaaccacccgctgctggtggtgtgtgcaaccacccgtgaagctgaagaaatggtggcg
gcactacgctgctacctgcccgatgaggcagtagagatgctgccggcttgggaaaccctg
ccccatgagcgcctgtcgcccagggctgacactgtggccgcgcgcctggccgtgctacgc
cgcctagcccacagtgaagagggcgctatcggcgtgctggtggtgccggtgcgggcgctg
ctggcgccggtaatcgcggggctgggtgaaattgagccgctcaccttgagcgctggcgcg
gagctacccttggaggcggccaccgagcgcctagtgaaaatggcttacacccgcgtggat
atggtggaaaatcgcggcgagtttgccgtgcgcggcggtattttggatgttttcccgccc
acctgcccgcgcccggtgcgtgtggactatttcggggatgagattgatgaaatctcctcc
tttgcggtttcagaccagcgctcaattgaggttttaaaagccccggtggtggttaccgcc
tgccgtgagctgctgcttaacgacgtcgtccgcgagcgcgccgccgccctggtcactaag
atcccgggtgcggcagatttgctggaaaaactagctgagggcatttacgttgagggcatg
gagtccctggcgccggtgctggtggacaagatggtgccgctgctggagttgactggccag
cgcctgactgtgattagcgagcctgagcgggtgcgtcgtcgcgctgaggatttggctgcc
accacccaggagtttttggcggcggcctggactagcgcggcttcgggtgggcaggtgccg
gtggatttgtcggcggcggcttttgcgcatttggctgatgtgcgccagttgagcttggct
aagggcctggggtggtggtcgtttaacgcctttgctagcgctccggatatgcctagtttg
cctattactgaggtgcccggctatggcggtggctttgaggcggctgcccgccaggtgggg
cagcaggctaaggctggttggcgggtagttattagcgctgagggtccgggcccggcgcgg
cgtttggctgaggttttgggtgagggagatattcctgcccgcattgtggctgatttggat
gaggctgcggatctgggcgctagtgacggtagcggcgacggcgtggtgcggattttgcct
gcctcggcttatcagtctttcctgattccttcccaaaaatttgcttttattggccagtcg
cagatcacggggcgggctagtgcttctccgcgcgcacctaaggcggtgccggcgcggcgc
tcgaagcgtagcgttgaccccctatcgctacatccgggtgatttggtggtgcactcgcac
catggggtggggcgttttgtggagctaacgcgccgcccggtgcccggaaaccgtaactct
agccgcgaatatttggtgattgagtatgcgccttctaagcgtggccagcctgctgaccgg
ctcatggtgcccactgactcgctcgatgcggttagtaaatatgtgggtggcgacgccccg
gcgctgagcaagatgggcggcgccgactggcaaaaaactaaggctaaagcccgcaaggcg
gtgcgtgaaatcgccggggagctggtgcgcctgtatgcggcccgccaggccgctaagggc
cacgcttttagccctgacaccccttggcaggcggagctagagcagtcttttgcctacact
gaaacccctgatcagctggtcaccattgatgaggttaaggctgatatggaaaagagtgcc
cctatggatcgcctgatctgtggggatgtgggttacggcaaaactgagattgcggtgcgg
gcagcctttaaagctgtccaagacggcaagcaggtggcggtgctggtgcccaccacgctg
ctggtgtctcagcacgcagaaactttcacagagcgttttgccggcttcccagtgaccgtg
gcgcagctgtcgcgtttccaaagcgctaaagaaagccagcaggtgctgcgtgaccttgag
caggggcgcatcgacgtcgtcgtaggcacccaccgcctgctgaccggctcagttaaattt
aaagacctggggctggtaattatcgatgaggagcagcgcttcggggtggagcataaagaa
gccctcaaagctatgcgcacagatgtggatgtgctgtccatgtccgccacccccatcccg
cgcacgctggaaatggcggttagcgggctgcgggaaatgtccaccctggccaccccgccg
gaggatcgccacccgattttgacctatgtaggcccctatgagactaagcaggtgggcgcc
gccatcaggcgtgagctgctgcgtgaggggcaggtgttctatgtgcacaacaaggttgaa
gacattgatgcggtggctgcgcgcctaactgaactggtgcctgaagctaatatcgccacc
gcccacgggcagatgagtgagcaccgcctagagaaggtaattgacgccttctggaagcgt
gaaattgatgtgctggtgtgcaccaccattgtggaaaccggcctggacgtgtctaacgcc
aacactttgattgtggaccgcgccgaccgtatggggctaagccagctgcatcagctgcgt
ggccgggtggggcgtggacgtgagcgggcctacgcctacttcctgtacccgggcgacaag
ccccttactgaaaccgcccaccagcgtctgcgcaccattgctaacaacactgatttgggt
gcgggtatgcaggtggccatgaaggacctagaaattcgcggcgccggtaatctgctgggc
ggggagcagtccgggcatatcgccggggttggttttgacctgtatctgcgcatggtgggt
gacgcagtggaggcttacaagcgcggcgtgggcctgggtgaagatgaggaggcagctgaa
cctgacttgaaggtggagctgcccattgacgccaatattcccgaggagtacctgccccat
gagcgcttgcgtttggaggcttacgcaaagatggctgcagctaagtctgatagcgacgtc
gacgacgtcctagcggagctagctgaccgttacggcccggtgcctgagcccacccaaaac
ctggcgcaactggcccgcttgcgcgtatatgcagccagcttgggggtgtacgagattgtg
gcgcagggtaaatctatccgtttcgcgccggtggccctgcctgagtcgggggcgatgcgc
gtcaagcgcctctacccgggcacaatcattaagccagccacccgcaccctggtggtgccc
gccccgggcacgcgcggtttgcgccgtgaaactttaagtgccagtgagctgctgcgttgg
gcgcaggtgttcttgcatgcggttgtagccggcgaggctgaatacgaaaccgaagccacc
aaataccgcagccgctaa
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