Arachidicoccus ginsenosidivorans: FSB73_15360
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Entry
FSB73_15360 CDS
T06150
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB73_15360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agi03019
]
FSB73_15360
03009 Ribosome biogenesis [BR:
agi03009
]
FSB73_15360
Enzymes [BR:
agi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB73_15360
Messenger RNA biogenesis [BR:
agi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB73_15360
Ribosome biogenesis [BR:
agi03009
]
Prokaryotic type
rRNA helicases
FSB73_15360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEC72853
UniProt:
A0A5B8VNR3
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All DBs
Position
3824193..3825887
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AA seq
564 aa
AA seq
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MITFEQLGLDDRLVKATSELGYIHPTPIQEQAIPVLLGATQDLIGLAQTGTGKTAAFALP
LLSIIKEDKKYPQALIVCPTRELCLQIVKEIVGFKKFMKEINVVAVYGGASISLQIRDIK
RGVQIIVATPGRLIDLIERKAVNLEKIQYVVLDEADEMLNMGFQDDIEFILKNTPIREST
WLFSATMPAAIRKVSKKYMDNPVEITVGKANTVNTSIDHQYYVTAAQHRYETLKRLIDFN
PGIYGIIFTRTKADAQNIAEKLTREGYDIDALHGDLTQPQRDRVMKQFRDRSLQLLIATD
VAARGIDVKEITHVINYELPDDVEVYTHRSGRTGRAGSTGICISIIHSRESYRLKQIQKI
VQAPFNKMEIPSGKDVCRKQFFSFMDRLLSADVSHGDYESYVPMLEERFADISKEEVLKR
VAALEFDRFLQYYENAGDLNVRPGENRADRRDRQTGRDRRDRGGDNDRRGQRKDRDNRDF
QGDTTRLFINIGTKDGFYKASFLQFILDMSDLRKDVLGRIDMKEMNSWVEIDKNAATQMV
RSLDGKKFKGRKIRMNDAETGGRR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgattacatttgaacaactgggcctggatgatcgcttggtaaaggctaccagcgaatta
ggttacatccacccaacgccaattcaagaacaggcaattcctgtactacttggcgcaaca
caagacctgatcggtctggcacagactggaacaggaaaaacagcagcatttgcattaccg
ctgctcagtattattaaggaggataagaaatatcctcaggccctgatcgtttgtccgaca
agagaactctgtttacagattgtcaaagaaatcgtcggatttaaaaaattcatgaaagag
attaatgtggttgctgtatatggaggtgcctccatcagcctgcagatccgtgatatcaaa
agaggggtgcagatcatagtcgccacacctggcagattgatcgatttgatcgaacgcaag
gccgtgaatctggaaaaaatccagtatgtcgtactcgatgaagcagatgaaatgctcaat
atgggctttcaagatgacattgaattcattttgaaaaatacgccgatcagagaaagcacc
tggttgtttagtgcgaccatgcccgcagcaatccgcaaagtatctaaaaaatacatggat
aatcctgtggaaatcactgtcggcaaggccaatacggtcaataccagcattgaccatcaa
tattacgtaacggcagcacaacaccgttatgagaccttaaaaagattgattgattttaat
cccggaatttacggtatcatctttacccgcaccaaggctgatgcccagaatattgccgaa
aaactcacgcgtgaaggttatgatatcgatgcattgcacggtgatctgacccaaccgcag
cgtgacagggtgatgaaacaatttcgtgaccgcagcctgcagttactaatcgcaacagac
gtggccgcccgtgggattgatgtaaaggaaattacccatgtcatcaactatgaattgccc
gatgatgtagaagtatatacccatagaagtggtcgtacaggccgggcagggtctactggt
atttgtatcagtattatccattccagagaaagctaccgcttaaaacagattcagaaaatc
gttcaggcacctttcaataaaatggaaattccttccggaaaggatgtatgtcgcaaacag
ttcttttcttttatggaccgcctgttgagcgcagatgtctcacacggggattatgaatca
tatgtcccgatgctggaagagagatttgcggacatttccaaagaagaagtgctcaaaaga
gtggctgcactggaatttgaccgctttttgcagtactatgaaaatgcaggagatctcaat
gtcagacccggtgaaaacagagcagacagaagagaccgccagacaggaagggaccgcaga
gaccggggtggagataatgatcgccgtggtcaaagaaaagatcgagataaccgggatttt
cagggggacacgaccagattatttatcaatatcggcaccaaagatggtttttataaagcc
agtttcctgcagtttatcctggatatgagtgatcttagaaaggatgtattgggtcgtatt
gatatgaaggagatgaattcctgggtagaaatcgataaaaatgcagccacacagatggtc
agatctctggacggcaaaaagtttaaaggacgcaaaattcgtatgaatgatgcagaaaca
ggaggtcgtcgttaa
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