Arachidicoccus ginsenosidivorans: FSB73_19070
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Entry
FSB73_19070 CDS
T06150
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB73_19070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agi03019
]
FSB73_19070
Enzymes [BR:
agi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB73_19070
Messenger RNA biogenesis [BR:
agi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB73_19070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
AAA_22
CMS1
SUa-2TM
AAA_19
SNF2-rel_dom
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEC73444
UniProt:
A0A5B8VP90
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All DBs
Position
4733217..4734341
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AA seq
374 aa
AA seq
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MTFKDLEIIPSILSALAAEGYERPTPIQQKSIPIILDRQDLLACAQTGTGKTAAFAVPLL
QLMAAEPVRKMQDIEALILAPTRELALQIDESFHSYSRNIAVRHAVIFGGVSQNKQLNDL
KARPAILVATPGRLLDLIGQGLLDISKIRYLVLDEADRMLDMGFVHDVKRIVRLIPKKRQ
TLLFSATMPPSIMQLAASLLFQPKKVQVDPVSSTAETVQQSVFMVGKENKKLLLAHLLKE
QAADKALVFTRTKYGADKLVRLLVKKGITAAAIHGNKSQQARQRALHHFKSGEIRVLVAT
DIAARGIDIEELPRVINYELPNIPETYVHRIGRTGRAGSSGLAISFCDSEEVAYLNSIQK
LIGFKVAVAKHPFQ
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaggatttagaaattatcccaagtattttatcagctcttgcggctgagggc
tacgagcgccctacccctattcagcaaaaatccattcctattatacttgaccgccaggat
ctgctggcatgtgcgcaaacaggtacaggtaaaacggcagcatttgcagttccattgttg
caattaatggctgcggagcctgtcagaaaaatgcaggatattgaggcgttgattctggca
ccgaccagggaactggccttgcagatagatgaaagctttcatagttacagtagaaatatt
gctgtccgccatgcggttatttttggtggcgtttctcaaaataaacaattaaatgacctg
aaagccaggccagctatcctggtggcaacgcctggtcgtttgctggatctgattgggcaa
ggtttactggatatctcaaagattcggtatctggtgcttgatgaggctgacagaatgctg
gacatgggttttgtccatgatgtaaaaaggattgtcaggttaatcccgaagaaaagacag
accttattattttcggccaccatgccaccctccattatgcaactagcagcaagcttgtta
tttcagcccaaaaaagtacaggttgatccggtttcttctactgcagagactgttcaacag
tccgtatttatggttgggaaagaaaacaaaaaattattgttggcgcatttattaaaagag
caggcggcagacaaagcacttgtgtttaccagaaccaagtatggcgctgataaactggtc
agactgctcgtcaaaaaaggtataacggcagccgctatccatggtaataaaagtcagcag
gcacgccagcgcgccctgcatcattttaaatccggtgagatccgggttttggtcgcgaca
gatattgctgccagaggcatcgatattgaagagttacctcgggtgattaactacgagctt
cctaatataccagagacctatgtgcaccgtatcggcagaactggtcgcgcaggaagttct
ggattagcgatttctttttgtgatagtgaagaagtggcttatttaaacagcatccaaaaa
ttaatcgggtttaaagtagcagtagcgaaacacccttttcagtaa
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