Aphidius gifuensis: 122848791
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Entry
122848791 CDS
T07796
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
agif
Aphidius gifuensis
Pathway
agif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122848791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agif03041
]
122848791
03009 Ribosome biogenesis [BR:
agif03009
]
122848791
Enzymes [BR:
agif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122848791
Spliceosome [BR:
agif03041
]
Complex A
U2 snRNP components
U2 related factors
122848791
Complex B
122848791
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122848791
Ribosome biogenesis [BR:
agif03009
]
Eukaryotic type
90S particles
Helicases
122848791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
TsaE
Myosin_head
T2SSE
AAA_7
ATPase
AAA_25
Motif
Other DBs
NCBI-GeneID:
122848791
NCBI-ProteinID:
XP_044003042
LinkDB
All DBs
Position
LG2:6956363..6960247
Genome browser
AA seq
724 aa
AA seq
DB search
MSKRRIEVADPYIKRKRDGEAGENSSTSALAPSIPAPLPKAQSQINPYTQLPYTARYHDF
YKKRITLPVFEYRAEFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSVSMGSKGVACTQ
PRRVAAMSVAQRVSEEMDVQLGEQVGYSIRFEDCSGPRTVLKYMTDGMLLREGMSDPMLE
GYQVILLDEAHERTLATDLLMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNAPLMNV
PGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEVPGDLLLFLTGQEEIEEACKRVKRE
MDNLGPEVGELKCIPLYSTLPPNLQQRIFESAPPNKQNGAIGRKVVVSTNIAETSLTIDG
VVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAYKN
EMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDD
GNLTDLGAIMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADD
AKMKFAHIDGDHLTLLNVYHAFKQNKEDPQWCYDHFVNYRSLKSGDNVRQQLSRIMDRFS
LKRTSTDFTSKDYYINIRKALVDGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLGHKPE
WVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYDLQNFPQCEAKRQLEVIQARIESKQY
QEGF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgtagaattgaagttgctgatccttacatcaaacgaaaacgtgatggtgaa
gctggtgaaaattcatcgacatcagcacttgccccatcaataccagctccattaccaaaa
gctcaatcacaaataaatccatacacacaattaccatacacagctcgttatcatgatttt
tataaaaaacgtataacacttccagtatttgaatatcgtgctgaatttatgcgtttatta
gcacaacatcagtgtattgtacttgttggtgaaactggatctggtaaaacaactcaaata
ccacaatggtgtgttgaatactcagtgtcaatgggatcaaaaggtgttgcatgtactcaa
ccacgtcgtgttgctgcaatgtcagttgctcaacgtgtatctgaagaaatggatgtacaa
cttggtgaacaagttggttatagtatacgttttgaagattgcagtggaccacgaacagtt
ttaaaatatatgactgatggtatgttattacgtgaaggtatgtctgatccaatgcttgaa
ggttatcaagttatattacttgatgaagctcatgaaagaacattagcaactgatttatta
atgggtgtattaaaagaagttataaaacaacgttcagatttaaaacttgttattatgagt
gcaacacttgatgctggtaaatttcaacaatattttgataatgcaccacttatgaatgta
cctggtagaacacatccagttgaaattttttatacaccagaaccagaaagagattatctt
gaagcagcaatacgtactgttatacaaatacatatgtgtgaagaagtacctggtgattta
ttattatttttaactggacaagaagaaattgaagaagcatgtaaaagagttaaaagagaa
atggataatttaggaccagaagttggtgaattaaaatgtataccattatattcaacatta
ccaccaaatttacaacaaagaatatttgaatcagcaccaccaaataaacaaaatggtgct
attggtagaaaagttgttgtatcaacaaatattgctgaaacatcattgacaattgatggt
gttgtatttgttattgatcctggttttgctaaacaaaaagtatataatccacgtatacgt
gttgaatcattacttgtatcaccaataagtaaagcatcagcacaacaaagagctggtaga
gctggacgtacaaaacctggtaaatgttttaggctttatactgaaaaagcatataaaaat
gaaatgcaagataatacatatccagaaatattacgttcaaatcttggtagtgttgtatta
caattgaaaaaattgggtattgatgatttggtacattttgattttatggatccaccagca
ccagaaacacttatgagagcacttgaattacttaattatttagctgctcttgatgatgat
ggtaatttaactgatttaggtgctattatggctgaatttccattggatccacaacttgct
aaaatgttgattgcatcatgtaatcacaattgcagcaatgaaatactcagtatcactgca
atgttatcagtcccacagtgttttgtcagaccaaatgaagctaaaaaagcagcagatgat
gctaaaatgaaatttgcccatattgatggtgatcatttgacgttattaaatgtttatcat
gctttcaaacaaaacaaagaagatccacaatggtgttatgatcactttgtcaactatcgt
tcattaaaaagtggagacaatgtacgtcaacaattaagcagaattatggatagattttca
cttaaaagaacatcaactgattttacttcaaaggattattatattaacataagaaaagca
cttgttgatggtttttttatgcaagttgcacatttggaaagaactggacattatttaact
attaaggataatcaaattgttcaattacatcctagtacatgtttaggacacaaaccagaa
tgggttatttacaatgaatttgttctaacaacaaaaaattatattagaactgttactgat
attaaacctgagtggcttttgaaaatagctccacaatattatgacctacaaaatttccca
caatgtgaagcaaagagacagcttgaggtcattcaagcaagaatagagtcaaaacaatat
caagaaggcttctaa
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