Aphidius gifuensis: 122851505
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Entry
122851505 CDS
T07796
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
agif
Aphidius gifuensis
Pathway
agif03013
Nucleocytoplasmic transport
agif03015
mRNA surveillance pathway
agif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122851505
09122 Translation
03013 Nucleocytoplasmic transport
122851505
03015 mRNA surveillance pathway
122851505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agif03019
]
122851505
03041 Spliceosome [BR:
agif03041
]
122851505
Enzymes [BR:
agif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122851505
Messenger RNA biogenesis [BR:
agif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122851505
Spliceosome [BR:
agif03041
]
Complex C
Other components
EJC/TREX
122851505
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122851505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122851505
NCBI-ProteinID:
XP_044006706
LinkDB
All DBs
Position
LG3:3751324..3755722
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEAVVDGSGDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPAVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPEEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgatgatcttttagactacgaagatgaggagcaaactgaggcagttgtt
gatggtagtggtgatgcaccagctaaaaaagaagtcaagggtacctatgtatcaatacac
agcagtggattcagagattttttacttaaaccagaaattttaagagcaattgttgattgt
ggttttgagcatccatctgaagttcaacacgaatgtattccccaagctgtacttggtatg
gacatattatgtcaggcaaaatctggtatgggaaaaacagctgttttcgtattggcaaca
ttacaacaattagaattgactgagaatcaagtttatgtacttgttatgtgccatacacga
gaacttgcattccagattagcaaggaatacgaaagatttagtaaatacatgccagcagta
aaggttggtgtgttctttggaggtttaccaatccaaaaagatgaggaagttttaaaaaac
acctgtccacatattgttgttggtacaccaggacgtattcttgcacttgtaagaaataaa
aaactcaatctcaaacatcttaaacactttatccttgacgaatgtgataaaatgctggaa
ttactcgatatgagaagagatgtacaagaaatatttagaagcacaccacatggcaaacaa
gttatgatgttcagtgcaacattatccaaggatattcgtccagtctgcaagaaattcatg
caagatcccatggaagtctatgttgatgatgaagctaaactcacacttcacggtcttcaa
cagcactacgtcaagctcaaggaaaacgagaaaaataaaaaattatttgaattgcttgat
gtcttggaattcaaccaggttgttatatttgtcaagtcagtccaaagatgtatggctctt
gctcaacttcttacagagcaaaatttccctgcaattggtattcacaggggaatgacacaa
gaagaacgtctgtccaggtatcaacaatttaaagacttccaaaagcgaatcttggttgcc
acaaatttgtttggccgaggaatggatattgaacgagtaaatattgtattcaattacgat
atgccagaagattcagacacatatttacacagagttgctcgtgctggacgttttggtaca
aaaggtttggcaataactctagtcagtgatgagagtgatgctaaaattctcaatgatgta
caagaaagatttgacgtaaacatcaccgaattacctgaagaaattgacttggcatcatac
atcgaaggccgataa
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