Aphidius gifuensis: 122852322
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Entry
122852322 CDS
T07796
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
agif
Aphidius gifuensis
Pathway
agif04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
agif00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122852322
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
agif00536
]
122852322
Glycosaminoglycan binding proteins [BR:
agif00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122852322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
DUF4834
YMF19
Motif
Other DBs
NCBI-GeneID:
122852322
NCBI-ProteinID:
XP_044008001
LinkDB
All DBs
Position
LG3:complement(18030325..18035374)
Genome browser
AA seq
1011 aa
AA seq
DB search
MSKKFHIFLLIIIIYIVFLQTLQAGTAKKRKIRSKKNAQGSTEYDEKDYYDYSYDEDNST
ETTTRSQVYQKNNETEGVTEPGEMTSVPYEASVQFNKTDYLKSSELNPGESIQIKTFTSI
QGEPGRSGDDGTPGYPGIPGNDGSSGLPGPPSDMSLYYRQLAMSQVNNDKGPTDAASPLY
NPLGYLQAAVGPPGPRGLQGNPGLTGPPGPMGLRGDPGDAGPPGSPGTPGPRGLPGFPGK
DGEEGEDGEAGRPGSPGARGPVGLPGMAGLPGLKGHPGLPGLDGAKGDQGLPGEKGSFGA
PGLAGPMGPMGPHGSRGEKGREGNQGPPGARGIDGMNGSPGSPGPAGRIGLPGVPGVPGF
KGDQGLMGLKGNQGDFGQKGEAGQPGQHGETGAPGIPGKNGSPGEKGIAGAKGAIGLPGF
PGNQGLTGTPGTTGAPGPKGMMGHPGERGLKGDIGIKGDAGIPGSRGPPGVPGNDGRKGK
RGVRGPIGAIGLPGPQGVAGERGMIGMPGPIGPIGLRGLKGPPGEIGPRGKSGQDGLPGL
IGHTGPQGLPGTPGEIGPEGVPGKAGPPGLTGRVGDKGPTGLPGPQGPPGGPGPVGPVGP
AGPMGLTGEKGVKGEMGIRGADGIQGPRGISGTPGLNGAKGDRGLEGFPGMKGHRGLMGL
TGMTGSPGIPGEKGGAGVPGMNGKDGLPGIRGPPGRDGNPGSIGISGDRGPPGIPGENGR
HGPPGPPGLPGPPGPPGDHGFRYDAATLAALMVQGQTKGPLPNSDQMMNDEPLKNSNKDI
TDEERNEIFSKTYERLKNSINDIMKPDGQKSSPVKTCGHLFKNYPDKQSGDYWIDPNEGE
INDAILVYCDAKNHATCIYVHPSKTQEINYIDNNRNGEMWLSEISNKAKINYKADNKQIN
FLQLSSSYAEQNLTYHCRNSVAYFDEERKTYRRGLKLLAWNDIELLPRGNQRFRYQVHLD
ECKARKDEWSKSILTYHTDKPTRLPVVDIALRDIGKSEQSFWIEISPVCYH
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaaatttcatatatttttactaataataattatttatattgtatttttacaa
actctacaagctggaacagcaaaaaaaagaaaaataagatccaaaaaaaatgcacaagga
tcaactgagtatgatgaaaaagattactatgattattcatacgatgaggataattcaact
gaaactacaacaagatcgcaagtttatcaaaagaataatgaaactgaaggagttactgaa
ccaggtgaaatgacatcagtaccttacgaagcatcggtccaatttaacaagacagattat
ttaaagtcatctgagcttaatccaggcgagagtattcaaattaaaacatttacaagtatt
cagggtgaaccaggaagatcgggagatgatggtacacctggttatccagggatacctggg
aatgatggatcatctggtctacctggaccaccttctgacatgtcattgtactatcgacaa
ttagcaatgtcccaagtgaacaatgacaaaggaccaactgatgctgcttcaccactttat
aatccattgggatatcttcaagcagcagtgggtccacctggacccagaggacttcaagga
aatcctgggcttactggaccaccaggaccaatgggtcttcgtggtgatccaggagatgct
ggtccacctggttcccctggtacaccaggaccaagaggattaccaggttttccaggaaaa
gatggtgaagagggagaagatggagaagctggtagaccaggaagtccaggtgcacgtggt
ccagttggtttaccaggaatggctggattacctgggcttaaaggacatcctggattacct
ggtttggatggtgccaaaggtgatcaaggattgcctggtgaaaaaggaagttttggtgca
cctggtcttgcagggccaatgggtcccatgggtcctcatggttctcggggagaaaaaggc
agagaaggtaatcaggggccacctggtgctcgaggtatcgatggcatgaatggatctcca
ggttcaccaggaccagctggaagaattggtcttccaggtgtcccaggagttcctggattc
aaaggagatcaaggcttgatgggtttaaaaggtaaccagggtgattttggtcaaaaaggt
gaagctggacaacctggtcaacatggagaaactggagcaccaggtataccaggaaaaaat
ggatctcctggtgaaaaaggaattgcaggagctaaaggagccattggtttgcctggattt
ccaggcaatcaaggtctcacaggcacacctggaactactggtgcacctggaccaaaagga
atgatgggacatcctggagaacgaggtttaaaaggagacattggaataaaaggagatgct
ggaattcctggttctagaggtcctccaggtgtacctggaaatgatggaagaaaaggtaaa
cgtggagtgagaggcccaattggagcgattggcttaccaggtcctcaaggtgttgctggt
gaaagaggaatgattggaatgccaggtcctattggaccaattggactacgaggacttaaa
ggaccaccaggtgaaattggaccacgtggaaaatcaggccaagatggattacccggttta
attggacacactggtcctcaaggtttacctggcactcccggtgaaattggaccagaaggt
gtaccaggtaaagcaggaccaccgggacttactggaagagttggtgataaaggaccaaca
ggtcttccaggtccacaaggaccacctggaggtcctgggccagtgggccctgttggacca
gctggacctatgggcttaactggagaaaaaggcgtcaagggtgaaatgggaatacgcgga
gctgatggcattcaaggcccaagaggaatatctggtacaccaggattaaatggtgcaaaa
ggtgatcgtggtcttgaaggttttcctggaatgaaaggtcatcgaggactaatgggtctt
acaggaatgactggatcacctggtattcccggagaaaaaggaggagctggtgtaccagga
atgaatggcaaagatggtttaccaggtatacgtggacctcctggaagagacggtaatcca
ggaagtattggaatatctggtgatcgtggaccaccaggaattccaggtgaaaatggacgt
catggacctccaggtccaccaggcttacctggacctcccggtccacctggtgatcatggt
tttcgatacgatgcagcaactcttgctgctttaatggttcaaggacaaactaaaggacca
ctaccaaattctgatcaaatgatgaatgatgaacctttgaaaaactctaacaaggatata
actgatgaagaaagaaatgaaatatttagtaaaacttatgaacgtttaaaaaattcaata
aatgacattatgaaaccagatggtcaaaaatcatcaccagttaaaacttgtggacattta
tttaaaaattatccagataaacaatcaggtgattattggattgatcccaatgaaggtgaa
attaatgatgcaattttagtttattgtgatgctaaaaatcatgcaacatgtatttatgta
catccatcaaaaactcaagaaataaattacattgacaataatcgtaatggtgaaatgtgg
ctcagtgaaatatcaaataaagcaaaaattaattacaaggctgataataaacaaattaat
tttttacaattatcatcaagttatgctgagcaaaatttaacctatcattgtcgtaatagt
gtggcttattttgatgaagagagaaagacttatcgacgaggacttaaattactagcatgg
aatgacattgaattgttaccaagaggaaatcaaagatttcgatatcaagttcatttagac
gagtgcaaggcacgtaaagatgaatggagtaaaagtattttaacttatcatactgataaa
ccaacaagacttccagttgtggatattgcacttcgtgatattggaaaatcagagcaaagt
ttttggattgaaatttctcctgtttgttatcattaa
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