Aphidius gifuensis: 122854182
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Entry
122854182 CDS
T07796
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
agif
Aphidius gifuensis
Pathway
agif03013
Nucleocytoplasmic transport
agif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agif00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122854182
03015 mRNA surveillance pathway
122854182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agif03019
]
122854182
Enzymes [BR:
agif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122854182
5.6.2.5 RNA 5'-3' helicase
122854182
Messenger RNA biogenesis [BR:
agif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122854182
mRNA cycle factors
Common to processing body (P body) and stress granule
122854182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
Helicase_RecD
DEAD
SLFN-g3_helicase
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
122854182
NCBI-ProteinID:
XP_044010566
LinkDB
All DBs
Position
LG4:complement(429950..434765)
Genome browser
AA seq
1185 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHEPAQSQQSQ
SVQINGTNGTSSSSSALDLKISGAAQNLAELQFEEEEEEAFYNRDLPEHACKYCGIHEAS
CVVMCNICRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVF
VLGFIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQL
RARQISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKL
EADYDKRLKESQTQENIEVRWDVGLNKKTIAYFLLAKTDGDMKLMHGDELRLRYLGELHK
PWIGLGHVIKIPDNYGEEVGIELKNSTGAPTECISNFVVDFIWKSTSFDRMQLALRKFAV
DDSSVSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG
PPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAI
DSPVSFLALHNQIKNMETNNELQKLQQLKDETGELSSADEKRYRLLKKSAEKELLEAADV
ICCTCVGAGDPRLHRIKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMC
KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKL
IKIDFPWPVQDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGV
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGF
LNDPRRLNVALTRSKYGLIIVGNPKVLSKQPLWNHLLSYYKEQKVLVEGPLNNLKESMIQ
FAKPKKLINSANPGSHFMSTSMYDAREAMIPGSIYDRSGGVGGGGQLNGIGGNAATVAAV
NAAAMNNHNQLHQNQNNNNPYYQRHVQLDMFSRTHDTISYISPERAQAAINNVPVPVGMF
MNMAHVPPRFYNQHQQAVQSRQTNPRINNNNNHNNYNTNNNNRRGGIINSMKTNKNKFGK
LNQHQQHQQQQQQQQQNDHINTQPFSQPGLPLTQGTTQGMSQPGGFSLSQPGLSQAELSQ
DSFVVGDFQSQMDGLLSQDSTYQGDRSGFYQGGQSQQGGQFSQPY
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcatatggaccaagtagtcaaacattgacatttttagacactgaagaa
gctgatttaattggagctgatacacaaggaagtgaatttgattttactgattttacatta
ccatcaccaagtcaaacacaagcatctcaacatgaaccagcacaaagtcaacaaagtcaa
tctgttcagataaatggtacaaatggaacatcatcatcatcatcagcattggacttgaaa
atatctggtgctgcacaaaatcttgctgaattacaatttgaagaagaagaagaggaagca
ttttataatcgtgatttacctgagcatgcatgtaaatattgtggtatacatgaagcatca
tgtgttgttatgtgtaacatatgcagaaaatggttttgtaatggacgtggtaatacatca
ggttcacatattataaatcatttagtacgagctaaacataaggaagttacattacacaga
gatggaccacttggtgaaacagtacttgaatgttattcatgtgctgttagaaatgtattt
gtacttggttttataccagcaaaagctgattcagttgttgtattattatgtcgtcaacca
tgtgcagcacaaagttccttgaaagatatgaattgggatcaagaacaatggaaaccatta
attgaagatcgtagttttttagcttggcttgttaaaataccatctgaacaagaacaatta
cgtgcacgtcaaatatcagcacaacaaataaataaacttgaagaattatggcgtgataat
gttgatgcaacatttcaagatttagaaaaaccaggtgttgatgaagaaccacaacaagta
ttattacgttatgaagatggttatcaatatcaaaatatatttggtccattagttaaactt
gaggctgattatgataaacgtttaaaagaatcacaaacacaagaaaatattgaagtacgt
tgggatgttggtttaaataaaaaaacaatagcatattttttattagctaaaacagatggt
gatatgaaattaatgcatggtgatgaattaagattacgttatcttggtgagctacataaa
ccatggattggtcttggtcatgttattaaaataccagataattatggtgaagaagttggt
attgaattaaaaaatagtactggtgcaccaactgaatgtattagtaattttgttgttgat
tttatatggaaaagtacatcatttgatcgtatgcaattagcattacgtaaatttgctgtt
gatgattcatcagtatcagcatatatatatcatcgtttacttggtcatgaagttgaagaa
gtattatttcgttgtcatttaccaaaacattttagtgcaccaaatttaccagatttaaat
cgttcacaagtatatgctgttaaacatgcaatacaacgtccattatcattaatacaagga
ccacctggtactggtaaaacagttacaagtgcaacaattgtttatcaacttgttaaacaa
aatggtggtccagtattagtatgtgcaccatcaaatacagctgttgatcaattaactgaa
aaaatacataaatcaaatttaaaagttgtacgtttatgtgctaaatcacgtgaagctatt
gattcaccagttagttttttggcattacataatcaaattaaaaatatggaaacaaataat
gaattacaaaaattacaacaattaaaagatgaaactggtgagctatcatcagctgatgaa
aaaagatatagattgttaaaaaaatcagctgaaaaagaattacttgaagctgctgatgta
atatgttgtacatgtgttggtgctggtgatccacgtcttcatcgtattaaatttcattca
atattaattgatgaaagtatgcaagcaactgaaccagaatgtatggtaccagttgtactt
ggtgctaaacagttaattttagttggtgatcattgtcaattaggaccagttgttatgtgt
aaaaaagcagcacgtgctggtttatcacaatcattatttgaacgtttagttgtacttggt
atacgtccatttcgtcttgaggtacaatatcgtatgcatccagatttatcacgttttcca
tcaaattttttttatgaaggttcattacaaaatggtgtatgtgctgatgaaagaaaatta
attaaaattgattttccatggccagtacaagataaaccaatgtttttttatgttacacaa
ggacaagaagaaattgctggtagtggtacatcatatttaaatcgtactgaagcatcaaat
gttgaaaaaataacaacaagatttttacgttgtggtgttaaaccagaacaaattggtgtt
ataacaccatatgaaggacaacgtgcatatcttgtacaatatatgcaatatcaaggttca
ttacattcaaagctatatcaagaaattgaagttgctagtgttgatgcatttcaaggacgt
gaaaaagatattattattatgtcatgtgttagatcaaatgaacatcaaggtattggattt
ttaaatgatccaagaagattaaatgttgcattaacaagatcaaaatatggtcttattatt
gttggtaatccaaaagtattatcaaaacaaccattatggaatcatttattaagttattat
aaagaacaaaaagtacttgttgaaggaccattaaataatttaaaagaatcaatgatacaa
tttgctaaacctaaaaaattaattaattcagcaaatccaggttcacattttatgtcaaca
tcaatgtatgatgcacgtgaagcaatgatacctggttcaatatatgatagatctggtggt
gttggtggtggtggtcaattaaatggtattggtggtaatgctgctactgttgctgctgtt
aatgcagcagctatgaataatcataatcaattacatcaaaatcaaaataataataatcca
tattatcaaagacatgtacaacttgatatgtttagtcgtacacatgatactatcagttat
attagtccagaacgtgcacaagctgctattaataatgtaccagtaccagttggtatgttt
atgaatatggcacatgtaccaccacgtttttataatcaacatcaacaagctgtacaatca
cgtcaaacaaatccccgaattaacaataataataatcacaataattataatacaaataat
aataatcgtcgtggtggtattattaattcaatgaaaacaaataaaaataaatttggtaaa
ttaaatcaacatcaacaacatcaacagcaacagcaacaacaacaacaaaatgatcatata
aatacacaaccattttcacaaccaggattaccattaacacaaggcacaacacaaggtatg
tcacaacctggtggttttagtttatcacaaccaggtttaagtcaagctgaattatcacaa
gattcatttgtcgttggtgattttcaatcacaaatggatggtttattatcacaagattca
acttatcaaggtgatagaagtggattctatcaaggtggacaatcacaacaaggtggacaa
ttttctcaaccatactga
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