Aphidius gifuensis: 122857480
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Entry
122857480 CDS
T07796
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agif
Aphidius gifuensis
Brite
KEGG Orthology (KO) [BR:
agif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agif03016
]
122857480
Enzymes [BR:
agif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122857480
Transfer RNA biogenesis [BR:
agif03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122857480
Prokaryotic type
tRNA splicing ligases
122857480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122857480
NCBI-ProteinID:
XP_044015599
LinkDB
All DBs
Position
LG5:7839523..7842183
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AA seq
506 aa
AA seq
DB search
MVVRSYEDELHYLERLTDYSFRIKKGFQPNMKVEGIFYVNKQLESLMLDELKQSCRPGNV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHAGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVLPYKEKIAQSMFDHIPVGIGSKGIIPMKARDLEEALEMGMDWS
LREGYSWAEDKEHCEENGRMLTADSSKVSTRAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
KSAACKMGIEEKGQVCIMIHSGSRGFGHQVATEALVRMEKVMSRDKIEVNDRQLACAQIN
SEEGQDYLKAMAAAANYAWVNRSSMTFLTRQAFAKQFNVSPDDLDMQVIYDVSHNIAKVE
EHMVDGRPKTLLVHRKGATRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM
QETFGSTCHGAGRAFSRAKSRRNLDYTAVLNKLEEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCDGAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagatcatatgaagatgagcttcactatctagagaggttaacagattattct
ttcagaattaaaaaaggctttcagccaaacatgaaggtagagggtattttttatgttaac
aagcaactagaatcattgatgttagatgagttaaaacaatcatgtcgccctggaaatgtt
ggtggttttttaccaggtgtaaaacaaattgcaaatgtagcagctcttccgggaattgtt
ggaagatcagttggtcttccagatgttcatgcaggctatggatttgctattgggaatatg
gcagcttttgacatgaacgatccaaaatcaattgtttctccgggaggtgttggttttgat
ataaattgtggtgttcgtctcttgagaacgaatttatttgaaaaagatgttctgccatac
aaggaaaaaattgctcaaagtatgttcgatcatattccggttggaattggttcaaaaggt
ataattccaatgaaagcaagagatttggaggaggctttagagatgggtatggattggtca
ttacgtgaaggatacagttgggctgaagacaaagaacactgtgaagaaaatggtagaatg
ttaactgccgattcatcaaaggtctcaacaagagctaaaaaaagaggcttacctcagctg
ggaacacttggtgctggtaatcattatgctgaaatacaagttgttgatgaaatttataat
aaatcagcagcgtgtaaaatgggaattgaagaaaaaggacaagtttgtataatgatacat
tcaggaagtcgtggttttggtcatcaggttgcaactgaagctctggttagaatggaaaaa
gttatgtcaagagataaaattgaagttaatgatagacaacttgcatgtgcacaaattaat
tctgaagaaggacaagattatttaaaagcaatggctgctgctgcaaattatgcttgggtc
aatagaagttctatgacatttctcacacgacaagcattcgcaaaacaatttaatgtttct
cctgatgatttagacatgcaagttatttatgatgtgtcacataacattgcaaaagttgaa
gaacacatggttgatggaagacctaaaacactattggttcatagaaaaggtgcaacaaga
gcttttccacctcatcatcctcttattccagtggattaccaacttactggccaaccggta
cttataggtggtacaatgggtacctgcagttatgttttaactggaacagaaaaaggaatg
caagagacatttggatcaacatgtcatggagctggtcgagcattttcaagagcaaaatct
agaagaaatctcgattacaccgctgtacttaacaagcttgaagaaatgggaatttctatc
agagttgcatctccaaaattagtcatggaagaggctccagagtcttataaaaatgtaaca
gatgttgttaatacttgtgatggcgctggtatttctaaaaaatgcatcaaacttcgacca
attgctgttatcaaaggataa
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