Aggregatibacter sp. oral taxon 513: J5A60_00175
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Entry
J5A60_00175 CDS
T08731
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
agj03009
]
J5A60_00175 (srmB)
Enzymes [BR:
agj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5A60_00175 (srmB)
Ribosome biogenesis [BR:
agj03009
]
Prokaryotic type
rRNA helicases
J5A60_00175 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrA_inter
Cas3-like_C_2
WSD
Motif
Other DBs
NCBI-ProteinID:
QUC05915
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All DBs
Position
complement(35240..36568)
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AA seq
442 aa
AA seq
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MTNLTQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFL
LPAIQHLLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNH
GEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETR
WRKQTLLFSATLEGDLLEDFADRTLNKPVKIDAEPSRRERKKIQQWYYHADSNEHKFKLL
ARFIEQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVV
TVLVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRL
LGKIKRYTQEILKARVIEGLEPRTKAPKDGEIKTVSKKQKAKKLEKREAQKKADKKTKQR
HQDRKNIGKRRKPSAATTETAQ
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacctcactcaatttgcagattttgatctcgcgcctgaattactcaacgccctc
cagaaaaaaggctaccaacgtcctaccgccatccaacaggaaaccattcctgccgcgatg
gagggctttgatgtcctcgggtcggcaccgaccggcactggaaaaaccgccgcgtttttg
ctaccggcgattcaacatttgttggattatccacgccgtaaaccgggcgcgccgcgtgtg
ttgattcttacaccaacccgtgaacttgccatgcaggtagcggaacaggcggaagaactt
gcctgctttaccaaactcagcattgcgaccatcaccggtggtgtggcgtatcaaaatcac
ggcgagattttcaataaaaatcaagacattgttgtggcgaccccggggcgtttgttgcaa
tacattaaagaagaaaattttgattgccgcgcggtagaaattctgatttttgacgaagcg
gacagaatgttgcaaatgggctttgggcaagatgcggagaaaatctcggcagaaacccgt
tggcgtaagcaaacgttgttattctcggcgacccttgaaggggatttattggaagatttt
gccgaccgcacgttaaacaagccggtgaaaattgatgcagaaccgagccgacgtgagcgg
aagaaaattcagcagtggtattatcacgccgacagtaatgagcataaattcaaattatta
gcgcgtttcattgagcaagagcaagtgagcaaaggcattgtattcgtacgccgtcgggaa
gatgtacgcgaactggcggaaaatttgcgcaaacgcggtattcgcagcacctatctggaa
ggtgaaatggcgcaaacccaacgcaataatgccatcgataaactgaaaaacggcgtggtg
acggtgttggtctccacggatgtctccgcacgcggtatcgatattgatgatgttagccac
attatgaattttgatttaccgtacagcgccgatacttatttgcaccgcatcgggcgtacc
gcgcgtgccggcaaaaaaggcaccgccgtgtctttcgtggaagcgcacgattatcgtcta
ctgggcaaaattaagcgttatacccaagaaattctgaaagcccgtgtgattgaaggtttg
gaaccgcgcaccaaagcgccgaaagacggtgaaatcaaaaccgtcagcaaaaaacaaaaa
gcgaagaaattagaaaaacgcgaagcgcaaaagaaagcggataaaaaaaccaaacaacgt
catcaagatcgtaaaaatatcggcaaacgccgtaaaccaagtgccgctacaacggaaacc
gcccaataa
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