Aggregatibacter sp. oral taxon 513: J5A60_01685
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Entry
J5A60_01685 CDS
T08731
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Pathway
agj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5A60_01685 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agj03019
]
J5A60_01685 (rhlB)
Enzymes [BR:
agj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5A60_01685 (rhlB)
Messenger RNA biogenesis [BR:
agj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5A60_01685 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUC06194
LinkDB
All DBs
Position
314430..315686
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AA seq
418 aa
AA seq
DB search
MQQNYLSSARFADFPLHPLVLQALNDKGFEFCTPIQALSLPVTLRGKDVAGQAQTGTGKT
IAFLTALFHHLLTHPTETAKNQPRALILAPTRELAVQIEHDAQVFLKTTKFKTALAYGGD
GYDKQLKAIENGVDVLIGTTGRVIDYVKQGIIRLDQIQTVVLDEADRMFDLGFIRDIRYL
LRKCPPAQQRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPEQKTGQQIKEELFYPSNQD
KIPLLLTLLEEEWPERCIIFANTKHQCEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQF
TDGDLDILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACE
QYAMNLPAIEEYIGHSIPVSQYDPNALLQDIPKPYRLKREGNFSAPNNQRRKPFRAKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaattatttgagttcggcacgttttgccgattttccgctacatcccttggtg
ttacaggcgttgaacgataaaggatttgagttttgtacaccgattcaggcgctttcattg
ccggtgactttacgaggaaaagatgtcgcagggcaagcccaaaccggcacgggaaaaaca
atcgcatttttgaccgcactttttcaccatttattaactcacccaactgagacggctaag
aatcaaccgcgtgcgttgattttggcgccgacccgtgaattggcggtgcaaattgaacat
gatgcgcaggttttcttaaaaacaacgaaatttaagaccgcacttgcttatggtggggat
ggctatgataagcaattaaaagccatcgaaaatggcgtggatgtgcttattggcacaacc
ggacgggtcattgattatgtgaagcagggcattatccgcttggatcagattcaaacggtg
gtgttggatgaagcggaccggatgtttgatttaggttttattcgcgatattcgttattta
ctgcgcaaatgtcctccagcgcaacaacgtctgacaatgctattttccgccacgctgtct
tacaaagtgcgcgaacttgcctttgaagatatgaatgacccggaatacgtggaaattgag
ccggaacaaaaaaccgggcagcaaattaaagaagaattattttacccgtctaaccaagat
aaaattccgctattgctcacgttgttagaagaagaatggccggagcgttgcattattttt
gctaacacgaaacatcaatgtgaggcgatttggggctatttagccgcggatggacaccgt
gttggtttgttaaccggcgatgtggcgcagaaaaaacgtctttctttgttgaaacaattt
accgatggcgatttggatattttagtggccactgatgtggcagcgcgtggcttgcacatt
gcagaggtgacacatgtgtttaactatgatttgccggatgatcgggaagattatgtgcac
cgtatagggcgtaccggacgcgcgggcgaaagcgggatttccattagctttgcttgtgag
caatacgctatgaatttaccggcaattgaagaatatatcgggcatagtattccggtgagt
caatatgatccgaatgcattgttacaggatattccgaagccttatcggttaaaacgggaa
ggtaattttagcgcgccgaacaatcaacgtcgtaagccgtttcgcgcgaaacgctag
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