Aggregatibacter sp. oral taxon 513: J5A60_04680
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Entry
J5A60_04680 CDS
T08731
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agj03032
]
J5A60_04680 (topA)
03400 DNA repair and recombination proteins [BR:
agj03400
]
J5A60_04680 (topA)
Enzymes [BR:
agj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J5A60_04680 (topA)
DNA replication proteins [BR:
agj03032
]
Prokaryotic type
DNA Topoisomerases
J5A60_04680 (topA)
DNA repair and recombination proteins [BR:
agj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J5A60_04680 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF4795
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QUC05062
LinkDB
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Position
complement(969010..971616)
Genome browser
AA seq
868 aa
AA seq
DB search
MTKSLVIVESPAKAKTINKYLGNNYVVKSSVGHIRDLPTVGSATGEKAKPISTKGLSAEE
KQAIKQQKEQDALVKRMGIDPYHSWKANYQILPGKEKVVAELKSLAKKADHIYLATDLDR
EGEAIAWHLREVIGGEDERYSRVVFNEITKNAIKQAFEHPENLNMDRVNAQQTRRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLIVEREREIKAFVPQEYWEVSVLTNTPKGDEI
QLDVTQFKGKKFEPKNAEQVQSAVDFLSKSDYVISDLETKPTSSRPRAPFITSTLQQTAS
TRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALNMVRGYIEKHYGHAYLPEKPNF
YSSKDNAQEAHEAIRPSDIHVGLNDLVGMEKDAVRLYDLIWRQFVACQMPAAQYDSTTLT
VTAGDYTLTAKGRILRFDGWTKVLPQQSKSAEDQALPDVSVNGKLNLSAVQPQQYFTKPP
ARFSEAALVKELEKRGIGRPSTYAAIISTIQERGYVRTENRRFYAEKMGEIVTDRLNQSF
ADLMSYDFTANMEDVLDQIASGEKNWKTELNQFFKDFSTQLTKAELDELEGGMRPNNLVE
TDIVCPTCGRNMAIRTASTGVFLGCTGYSLPPKERCKTTINLIPEAELLNVLDDASETKA
LMERKRCPKCGTAMDSYIIDPHRKLHICGNNPNCEGYLIEEGKFKIKGYDGPVVECDKCG
GDMHLKLGRFGKYMGCTQCDNTRKILKNGEVAPPKEDPIPFPELKCEKSDAYFVLRDGAS
GVFMSAHNFPKSRETRAPKVVELALYRERLPEKLRYLADAPQVDPEGNEAIIRFSRKEKR
QYVTSEKNGKATKWIVDFVDGKWIERKK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatccttggttattgtggagtcgccggcgaaggcgaaaaccattaataaatat
ttaggaaacaattatgtagtgaaatctagcgtgggccatattcgtgatttgccgacggtg
ggttccgcgaccggagagaaagccaaacctatttccaccaaaggtcttagtgcggaagaa
aagcaagcgataaaacaacaaaaagaacaagatgctttagtcaaacgcatggggatcgac
ccatatcacagttggaaagccaactatcagattttacccggtaaagaaaaagtcgttgct
gaactaaaatcccttgccaaaaaagccgatcatatttatctcgctaccgacttggataga
gaaggagaggccatcgcgtggcatttgcgtgaggtgattggcggtgaggatgaacgctat
agccgtgtcgtcttcaacgaaattacgaaaaatgccattaaacaagcctttgaacatcct
gaaaatttgaacatggatcgcgtgaatgcgcagcaaactcgccgtttcctagatcgtgtt
gtcggttttatggtgtcgccgttgctgtggaaaaaagtggcgcgagggttatctgccggc
cgtgtgcaatcggtcgccgtgaaattgattgtagaacgtgagcgtgagattaaggcgttt
gtgccgcaagaatattgggaagtttccgttcttactaacacaccgaaaggtgatgaaatt
cagttagatgtcacgcaatttaaaggcaaaaaatttgagccgaaaaatgcggaacaggta
caaagtgcggtggattttttaagtaaatccgattatgtcatttctgatttagaaaccaag
ccgaccagttctcgaccaagagcaccgttcattacgtctacgctacaacaaacggcaagt
acccgtttgggctttggtgtaaagaaaaccatgatgttagcgcaacgtttatatgaagcg
ggttacatcacttatatgcgtacggactccactaatttaagccaagatgccttaaatatg
gtgcgcggttatattgaaaaacattacggacacgcttatttaccggaaaaaccgaatttt
tactccagtaaagacaatgcgcaagaagcccatgaggctattcgaccttccgatattcat
gttggattaaatgatttagtcggcatggaaaaagatgccgtgcgtttatacgatttaatt
tggcgtcagtttgtagcctgtcaaatgccggctgcacaatatgacagtaccacgttaaca
gtgacagcaggggattatacgttaacggccaaaggacgtattttacgttttgacggttgg
acaaaagtattgccgcaacaaagtaaatctgctgaagatcaagcgctaccggatgtttct
gttaacggtaagctcaatttgtctgcagtgcagccacaacaatatttcactaaaccaccg
gcacgtttttcagaagccgcattagtgaaagaattggaaaaacgtggtattggccgacct
tccacctatgccgccattatttctacgattcaggaacgcggttatgtgcgtacagaaaac
cgtcgtttttatgcagaaaaaatgggcgaaattgtgaccgatcgcttaaatcaatctttt
gctgatttaatgagctatgattttactgccaatatggaagatgtgttggaccaaatagcg
tccggcgagaaaaactggaaaaccgaattaaaccaattcttcaaagatttctcgactcaa
ctgaccaaagcggaattagacgaattagaaggcggaatgcgtccgaataatttggtcgaa
accgatattgtttgtccgacttgcggacgcaatatggccatcagaacggctagcacagga
gttttcttaggttgtaccggttattctttgccaccgaaagaacgttgcaaaactactatt
aatttgattccggaagcggaattattaaatgtgttggatgatgcatcggaaacgaaagcg
ctaatggaacgtaagcgttgtccgaaatgtggtacggcgatggatagttacattatcgat
ccacatcgcaaattgcacatttgcggtaataatccaaattgcgagggttatttaatcgaa
gagggtaaatttaagattaaaggctatgacggtccggttgtcgaatgtgataagtgcggt
ggcgatatgcacctcaaattaggacgtttcggtaaatacatgggctgtacgcaatgtgat
aacacccgtaaaattttaaaaaatggtgaagttgcaccaccaaaagaagacccgattcct
ttccccgaattaaaatgcgaaaaatcggatgcttactttgtattacgcgatggtgccagc
ggcgtgtttatgtcagcccataatttcccgaaatctcgtgaaactcgcgccccgaaagtg
gtagaattggcgttgtatcgtgagcgtttaccggagaaattgcgctacttagccgatgca
ccacaagtcgatccggaggggaatgaggcaattattcgttttagccgtaaggaaaaacgt
caatatgttacctctgaaaagaatggcaaagccacgaaatggattgtggattttgtcgat
ggaaaatggatagagcggaagaagtaa
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