Aggregatibacter sp. oral taxon 513: J5A60_04995
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Entry
J5A60_04995 CDS
T08731
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Pathway
agj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J5A60_04995 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agj03400
]
J5A60_04995 (recD)
Enzymes [BR:
agj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J5A60_04995 (recD)
DNA repair and recombination proteins [BR:
agj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J5A60_04995 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
NAT10_TcmA_helicase
AAA_11
UvrD_C_2
Viral_helicase1
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
ResIII
DEAD
TrwB_AAD_bind
AAA_7
UvrD_C
Pectate_lyase_2
NTPase_1
T2SSE
PhoH
NACHT
Flavi_DEAD
ATPase
AAA_33
AAA_28
AAA
NPHP3_N
AAA_24
SRP54
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QUC05123
LinkDB
All DBs
Position
complement(1032692..1034671)
Genome browser
AA seq
659 aa
AA seq
DB search
MLALLSQLKEKGIINAADYYFAEFIHRKQQPFDYAPSVQNLAVLMAALCNFNYRQGNTCL
LLNQATEQDLFGLQDYFNERIYLTEIQQKIDYLPISQWQSTLQKAQHIAFTDSPLQQIAP
LVLQFNCLYFYRVWQDEFRIADYFKSAVCFEPVFSTEQLSQIASILDRYFQEEQGIDWQK
IAVAIALRQRFCLITGGPGTGKTTTVTKLLLTLQELYQNDLRIKLVAPTGKAAARLTESI
VDAVERLKQTFAQEPSKREIVENLAIPMNAETIHRLLGVRFFSEETRYHVDNPLPWDVLV
VDEASMIDLTLMAKLLNALKPETKLILLGDKDQLASVEAGAILGELGRFVNAAKPTYSSS
MAQYLQATTGMTLPSEDKVNAISDSICYLQVSRRFGANPEVGELATTVNLGDALKSWQLL
QQYQQHQDKHCGVYLTDFAHYLSNKDDEQQRKACVKLIVDRAAEEYARYLQQIPSEGVLH
EDQVRSIFAAFNRIRFLTALRVGEFGVEQLNLAIAEKLRQKRLLQFHQEREWYIGKPIMV
TQNDSSVGLYNGDIGIYLGHGRVWFEQGQNSYKTVLASRVPNHETAFVMTVHKSQGSEFP
HTFLILPLENSPVLSKELVYTGITRTKDFLTVFASQSVWESAVKNPVQRQSGLGQLLAE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttagctctattatcccaactcaaagaaaaaggcattattaacgccgccgactattat
tttgccgagtttattcaccgtaaacagcaaccgtttgattatgcgccctctgtgcaaaac
ttggcggtcctgatggcggcattgtgtaattttaattatcgtcaaggcaacacctgtctt
ttgttgaaccaagccactgaacaggatttatttggtttacaggattatttcaacgaacgt
atttatctgacggaaattcagcaaaaaattgattatttgccgatctcccaatggcaatct
accttgcaaaaggcgcaacacatcgcctttacggattcgccattacagcaaattgcgccc
ttggtgttgcagtttaattgcttgtatttttatcgtgtgtggcaagacgaatttcgaatt
gccgattacttcaaaagtgcagtctgttttgagcctgttttttcaaccgagcaactctca
caaattgcctcgattctcgatcgctattttcaggaagaacaggggattgattggcaaaaa
atcgccgtggctatagcgctgcgtcagcgtttttgtttaattaccggcgggccgggaacg
gggaaaacaacaaccgtaaccaagttgcttttaaccttgcaagaactgtatcaaaacgat
ttgcgcattaaattggttgcgccaacaggtaaagcggcagcgcgtttaacggaatctatt
gtggatgccgtggaacgtttaaaacagacatttgcacaggaaccaagtaagcgggaaatc
gtcgagaatttagcgattccgatgaacgcagaaacgatccatcgtttgcttggtgtacgc
tttttcagtgaagaaacccgttatcatgtggacaatccattgccgtgggatgtgttggtg
gtggatgaggcatccatgatcgatctcaccttaatggctaaattgcttaatgcgctcaaa
ccggaaaccaaactgattttgttgggcgataaagaccaacttgcttccgtagaggccggt
gctattttgggcgaattagggcgttttgtgaatgcggcaaaaccgacatacagctcgtcc
atggcgcaatatttacaggcaacgacagggatgacattgccatcagaagataaggtaaat
gctattagcgacagtatttgttatttacaagtcagtcgccgttttggggcgaatccggaa
gtgggtgagttggcaacgaccgtgaatttaggggatgcgctcaagagttggcagttatta
caacaatatcagcaacatcaagataagcattgtggtgtgtacttaacggattttgcgcat
tatttgagtaataaagacgacgagcaacagcgtaaagcttgtgtgaaattgattgtcgat
cgtgctgcggaagaatatgcgcgctatttacaacagattccgtcagagggcgttcttcat
gaagatcaagtgcggtcaatttttgccgcgtttaaccgtatccgctttttaaccgcatta
cgcgtaggcgagtttggtgtcgagcagttaaacctcgctattgcagaaaaattgcgtcaa
aaacggttgttacaatttcatcaggaacgggaatggtatatcggaaaaccgattatggtt
acacaaaatgacagtagtgtcggcttatataacggtgacatcggtatttatttaggtcat
gggcgcgtatggtttgaacaaggacaaaatagctacaaaacggtgctggcaagccgggtg
ccgaatcatgagaccgcctttgtcatgaccgtgcataaatctcaaggttccgaatttcca
catacgttcctgattttaccgttggagaatagcccggttttatccaaagagctggtttac
acgggaatcacacgcaccaaagatttcctcacggtatttgcatcgcaaagtgtgtgggaa
agtgcggtgaaaaatccggtacaacgccaaagcggattagggcagttattagcagaataa
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