Aggregatibacter sp. oral taxon 513: J5A60_05820
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Entry
J5A60_05820 CDS
T08731
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agj03019
]
J5A60_05820 (hrpA)
Enzymes [BR:
agj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J5A60_05820 (hrpA)
Messenger RNA biogenesis [BR:
agj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J5A60_05820 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_30
HA2_N
NACHT
ResIII
AAA_25
DUF1664
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QUC05262
LinkDB
All DBs
Position
complement(1213617..1217618)
Genome browser
AA seq
1333 aa
AA seq
DB search
MKNKSVKREVTSLQQSLFSQLNDIMRLDQRRLSARIHGIGKIKSQEAQQAVAAEIQQQIE
QARFRVEQRKSAVQNLIVFPESLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMC
LELGLGNLGTIGHTQPRRIAARSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMT
DGILLAEIQTDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPVAEEDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTV
PGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDF
NNRSEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLLEELGAIQP
KKYKSHDGARLPTRVQNLTNESSRQETRASELTEKKQGWELTPIGRQLAQLPVDPRLAKM
LLSAVDFGSVYEVMIIVSALSIQDPRERPTEKQQASDEKHRRFADKKSDFLAFLNLWHYV
QEQQKELTKNQFRRQCQKDFLNYLRIREWQDIYQQIRLAVREMGLPINSEKAEYQKIHTA
LLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVA
EIEPEWIEPLAEHLTKKSYSEPRWSKSRGAVIADEKVSLYGVPIVAARPVNYGSIDPIVS
RELFIQSALVEGDWNTKHKFFKQNQQLIREVEELEHKSRRRDILVDERTLFEFYDQRIGT
DVVSQKHFDTWWKKAEKQDPELLNFERSFLINDDAEQVSKLDFPNFWHQGNLKLKLTYQF
EPGTDADGVTVHIPLPLLNQVEMTGFDWQIPGLREELVIALIKSLPKSYRRNFVPAPNYA
QAFLGRAVPLEKPLLETLIYELRRMTGVTVEAEHWNWEQIPSHLKMTFRVVDENGKKIAE
SMNLDELKFSLKDRVQESISAVADDGIEQSGLHIWSFAELPQCYEQKQRGFSVKAFPAIV
DEKDAVGIKLFETEFEQAVAMQQGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFTPFGRV
LDLIDDCIACAVDKLIADFGGFVWNEEGFNKLRDFVRENVNEVTVDIAQKVEQILTLTHQ
LNQRLKGKMDFTMAFALSDMKSQISGLIYQGFVQKSGYARLPDLLRYLQAIDKRMDKLAQ
DVNRDRAVMLRVEQVQQAYQQLLAKLPKSKPISDEVAEIRYMIEELRVSLFAQQLGTKYQ
VSDKRVLNLINEI
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaaatcagtaaaacgtgaagtaacctctttacagcaatcccttttttctcaa
ctcaacgacatcatgcggctggatcaacgccgtttatccgcccgcattcatggcatcggc
aagattaaaagccaagaggcgcaacaagccgttgcggctgaaatccaacaacaaattgaa
caagcaagatttcgtgtagaacaacggaaaagtgcggtgcaaaatctcatcgtttttccg
gaaagcctgcctgttagccaacgcaaagcagaaattcaaaaactgctttccgagcatcaa
gtgatcgtcgtggcgggggaaaccggttcagggaaaaccacgcagttgccgaaaatgtgt
ttggagcttggcttaggcaatctcggcacaatcggacacacccaaccgcgccgtattgcc
gcccgttcggtagctgctcgaatcgccgaagaattacaaacagagcttggcgatttagtg
gggtataaagtccgttttaatgatcagattagcgataacacccaaatcaagttgatgaca
gacgggattttgctggctgaaattcaaacggatcgtttcctcaatcaatattcttgcctg
attattgatgaagcccatgaacgcagcttgaacaacgattttattctcggttatctgaaa
cagttgctaccacgccgtccggacttaaaagtcattatcacctcggccaccattgatgtg
gaacgtttttctaaacattttaataacgcgccgattatcgaagtctcgggcagaacttat
cccgtggaagtgcgttatcgccctgttgcggaagaagacgatcaagatcagctacaaggc
attcttaatgcggtggatgagctgcaagcggaagggcgcggcgatattttgatctttatg
aacggtgaacgggaaattcgagacaccgccgaagccttgcaaaagcaaaatctaaaacac
acggaaatcctaccgctctttgcccgcttgtctgcgcaagaacaaaacaaaatttttcat
ccgagtgggctaaatcgcattgtgttagcgaccaacgttgcggaaacctcgctcaccgtg
ccaggcattaaatatgtgattgacccaggcacggcgcgtatttcccgttatagctatcgc
accaaagtgcaacgcttgccgattgagccgatttcacaggcttctgctaatcagcgaaaa
ggtcgttgcggacgggtaagtgagggcatttgtattcgtctttattcggaagaggatttt
aataatcgctcggaatttaccgatccggaaattctgcgtaccaatttggcttctgtcatt
ttgcaaatgacggcgttgggtttggacgacattgaagcgtttccttttgtcgatgcgccg
gataaacggcatatccaagatggcgtgaagttattggaagagttaggcgcgattcaaccg
aaaaaatataaatctcatgatggcgcgcgtctcccgacgcgtgtccaaaatttgacaaat
gaaagctcgcgtcaggagacgcgcgctagcgaattgacagagaaaaagcaaggttgggaa
cttaccccaatcggtcgccaacttgcccaacttcctgtcgatccgcgccttgccaaaatg
cttctaagtgcggtcgattttggcagcgtttatgaagtgatgattattgtctcggcgtta
tccattcaagatccgcgtgagcgcccaaccgaaaaacaacaggcttccgatgaaaaacat
cgtcgctttgccgataaaaaatcggatttcttggcgttcttgaatctttggcattatgtg
caagaacagcaaaaagaattaacgaaaaaccaattccgccgtcagtgccaaaaggatttt
ttaaattatttgcgcattcgtgaatggcaggatatttatcaacaaattcgccttgctgtg
cgtgaaatgggcttgccgattaattcggaaaaagcagaatatcagaaaattcacaccgca
cttttaagtggcttgctgtcgcatatcggcttaaaagaagctgaaaaacaacaatatctt
ggcgcccgcaatgcgcattttgcgattttccctaattccgtgcttttcaaaaaacaaccg
aaatgggtgatggcggcagagttggtggaaacctccaaactttgggggcgcatggtggcg
gaaattgagccggaatggattgagccgcttgccgagcatttaacgaaaaaatcctattcc
gagccacgttggtcgaaatctcgtggggcggtgattgccgatgaaaaggtgagcttgtat
ggcgtgccgattgtggcagcccgaccggtgaattatggctcgattgacccaatagtgagt
cgtgagctctttattcaatccgccttggtggaaggggattggaacaccaagcacaaattc
ttcaagcaaaatcagcaactgattcgagaagtggaggaattggaacacaaaagccgtcgc
cgtgatattttggtggacgagcgcaccttatttgagttttacgatcagcgtatcggcact
gacgtggtgtcgcaaaaacattttgatacttggtggaaaaaggcagaaaaacaagatccc
gagctacttaattttgaacgctccttcttgattaacgacgatgccgagcaagtgagcaag
ctggatttcccgaatttctggcatcaaggcaatctgaaactcaaactgacctatcaattt
gaaccgggtacggatgcggacggcgtgaccgtgcatattccgttgccgttgctcaaccaa
gtggaaatgacgggctttgactggcaaataccgggcttgcgggaagaactggtgattgcg
ctgattaagtctctgccgaaatcttatcgtcgtaatttcgtgccggcaccgaattatgcc
caagcctttttagggcgcgccgtgcctttggaaaagccattgttagaaacgctgatttat
gaattgcgccgtatgacgggtgtcaccgtagaagcggaacattggaattgggaacaaatc
ccgagccatttgaaaatgactttccgtgtggtggatgaaaacggcaagaaaatcgccgaa
tccatgaatttagacgagctgaaatttagtttaaaagatcgtgtgcaagaaagtatttct
gcggtggcggatgatggcattgagcaaagtgggttacacatttggagtttcgccgagcta
ccacaatgttacgaacaaaaacagcgcggttttagcgtgaaagctttcccggccattgtg
gacgaaaaagacgcagtgggcattaaactgtttgaaacggaatttgaacaagcggtagca
atgcaacaaggtttgcgccgtttgttgctactcaacgtgccgtcaccgattaaatatctg
catgaaaaattgccgaataaagccaaattggggctgtattttacgccgtttgggcgcgtg
ttggatttaattgacgactgcatcgcctgtgccgtggataaactgattgcggatttcggc
ggctttgtgtggaacgaagaaggctttaataagctacgggattttgtgcgtgaaaacgtt
aatgaagtcaccgtagatattgcgcaaaaagtggagcagatcctcacgctcacacaccaa
ctcaaccaacgtctcaaaggcaaaatggattttactatggcattcgccctgtccgacatg
aaaagccagatttcaggtttgatttatcaaggcttcgtgcaaaaaagcggctacgcccgc
ctgccggacttactccgctatctacaagccatcgacaaacgcatggataaacttgctcaa
gatgtcaatcgtgatcgtgccgtcatgttacgcgtggaacaagtgcaacaagcctaccaa
caactccttgccaaactaccgaaatccaaaccaatttctgatgaggtggcggagattcgt
tatatgatcgaggaattgcgggtgagtttgtttgctcagcagttggggacgaagtatcag
gtgtcggataagcgggttttgaatttgattaatgaaatttag
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