Aggregatibacter sp. oral taxon 513: J5A60_06210
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Entry
J5A60_06210 CDS
T08731
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agj03016
]
J5A60_06210 (rnb)
Enzymes [BR:
agj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J5A60_06210 (rnb)
Transfer RNA biogenesis [BR:
agj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
J5A60_06210 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
Motif
Other DBs
NCBI-ProteinID:
QUC05335
LinkDB
All DBs
Position
1300583..1302562
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AA seq
659 aa
AA seq
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MFQDNPLLAQLKQQIHDSKERVEGTVKGSDKAYGFLECDKKSYFIAPPAMKKVMHGDKIS
ATIEKQGDKEQAEPEALIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQSKAVKE
ELQEGDWVVATLKTHPLRDNRFFYAQITQFICHANDELAPWWVTLARHEQPREPVQGQDH
YEMQDQETRENLTALHFITIDSETTQDMDDALYIEPITSNGEETGWQLVVAIADPTAYIS
LNSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLKPNEIRPALVCYIQTDLAGNITA
PSRFVLAEVQSKAKLAYNNVSDYLEGKDNAWQPENPETAQQIHWLHQFTLTRTQWRKTHA
LLFKEKPDYSFVLGENGKVQEIKAEYRRIANQIVEESMIIANICAAQFLHENLQCGIFNT
HSGFDKKFLENAHNFLLANLANDENKAELQSRYAPENLATLSGYCEMRHDIEPIEGDYLE
FRLRRFLTFAEFKAELAPHFGLGLNGYATWTSPIRKYSDMVNHRLIKAHLANRDFAKPEE
SVLARLQETRRQNRLVERDIADWLYCRYLADKVAEKPEFDAEVQDVSRGGLRVMLLENGA
SMFIPASTLHDNKEEVLINPDEIAFYVKDQRLYKIGDPIRVQLTEVRETTRSIVGTVVK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataatccattactcgcacaactcaaacaacaaattcatgacagcaaagaa
cgtgtggaaggcacggtgaaaggctccgataaagcctatggctttttagaatgtgataaa
aaaagctactttattgcgccacctgccatgaaaaaagtcatgcacggcgacaaaatcagc
gccacgatcgaaaaacaaggcgataaagaacaagccgaaccggaagccttaatcgagccg
atgcttacccgttttatcgcgaaagtgcggttcaataaagacaagaaattgcaggtgctt
gttgatcaccctaacatcaatcagcccattggcgccgcacaaagcaaagcggtcaaagaa
gaattacaggaaggcgattgggttgtggcaaccctaaaaacccaccctttgcgcgacaat
cgctttttctatgcgcaaatcactcaatttatttgccacgccaatgatgaactggcacct
tggtgggtgacccttgcgcgtcacgaacaaccgcgtgaaccggtacaaggacaagatcac
tatgaaatgcaggatcaagaaacgcgcgaaaatctgaccgcacttcacttcatcaccatc
gactctgaaactacgcaggacatggacgacgccttgtatattgagcctatcacctcaaac
ggcgaagaaaccggctggcaattagtggttgctattgccgatccgacggcttatatcagt
ttaaattcacaaatcgaaaaagacgctaaacaacgttgtttcaccaattatttgcccggc
ttcaatattccgatgttgccacgggaactgtccgacgagctatgctccctcaaaccaaac
gaaatccgcccggcattagtgtgttatattcaaacagatttagccggcaacatcaccgcg
ccttcacgatttgtattggcagaagtgcaatctaaagccaaattagcctataacaatgtt
tccgattacctagaaggcaaagacaatgcttggcagccggaaaatccggaaacagcacag
caaattcactggctacaccaatttaccctaaccagaacgcaatggcgtaaaacccacgcc
ctactttttaaagaaaaaccggattattctttcgtgctgggagaaaacggcaaggtgcaa
gaaattaaagcggagtatcgccgtattgccaaccaaatcgtggaagaatctatgattatc
gcgaatatctgcgccgcccaatttttacatgaaaacttacagtgcggcattttcaacacg
cacagcggattcgataaaaaattcttggaaaacgcccacaatttcttgttagccaattta
gccaatgatgaaaacaaagcggaattacaaagtcgttatgcaccagaaaatttggcaacc
ttaagcggttactgcgaaatgcgccatgatattgaaccgattgaaggggattatttggaa
ttccgtttgcgtcgtttcctcactttcgcagaatttaaagcagaattggcaccgcacttt
ggcctgggcttaaacggctacgccacgtggacgtcgccgattcgaaaatattcggatatg
gtgaaccatcgtttaatcaaagcccatttagccaaccgtgattttgctaaaccggaggaa
agcgtacttgcccgcttgcaagaaacccgtcgccaaaatcgtttggtagaacgagatatt
gccgattggctatattgtcgctatttagcagataaagtcgctgaaaaaccggaatttgac
gcggaagtgcaagatgtgagccgtggcggcttacgtgtgatgttgctagaaaatggcgcc
tccatgtttattccagcctcaacgctgcacgacaataaagaagaggttttgattaatcct
gatgaaatcgctttttatgtgaaagatcagcggttatacaaaatcggcgacccaattcgt
gtacaactcactgaagtgcgggaaacgacccgaagtattgtgggaaccgtcgtcaaatag
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