Aggregatibacter sp. oral taxon 513: J5A60_06820
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Entry
J5A60_06820 CDS
T08731
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Pathway
agj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5A60_06820 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agj03019
]
J5A60_06820 (rne)
03009 Ribosome biogenesis [BR:
agj03009
]
J5A60_06820 (rne)
Enzymes [BR:
agj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J5A60_06820 (rne)
Messenger RNA biogenesis [BR:
agj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J5A60_06820 (rne)
Ribosome biogenesis [BR:
agj03009
]
Prokaryotic type
rRNA processing factors
J5A60_06820 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
RecD_N
Motif
Other DBs
NCBI-ProteinID:
QUC05445
LinkDB
All DBs
Position
1421767..1424625
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AA seq
952 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHDVDIIVVPNEAMETP
NFSVFRVRDGEEVNELSYNLAKLHQDQDETFAAEESLVSRNIEATPAETPAVESAAVSLA
ITMPAPEPVERKVPKAPSLLSRLFAVLKGLFASEPKQEEKNKKARSNNRNSNNRNRRNQD
RRNNRRVRNENVENVVEEQSADKSEVRNRHQDRNAKRNRKPEVIEEIIKPESSTPVTEEK
AEPAQRRQRRDLRKKVRVYDEVNDIQADQAENVSFVENANVAHAPEESIVSAEAAEISNE
PERNRDNSRQRRLPRHLRVNNQRRRRNQQEKSPMPLFAAVASPELASGKVWIDMSQVNQP
KETPFLSVDELLEQQNQSTAETEKSITVPALDMIVEKAKNEVQPLTEFITQPANESVEKK
IQASLERLNNNVTSEPTAAIAEQLEPKAEHDVKFMAEIDRTYVFNGRIGTFSAVTHTKAD
ATLAKASDEPIKTYPVQEWQESRYYFYGKGAAGHHTAISHVYAEPTKTESEN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgcgttgcgttagtcgat
ggacaacgcttattcgacctggacattgaaagtcctggtcacgaacagaaaaaagccaat
atttacaaaggaaaaatcactcgcgttgagccgagtttagaagccgcttttgtggattat
ggcgcagaacgtcacggttttttaccgttaaaagaaattgcacgtgaatatttcccggcg
gattatgtctatcaaggtcgcccaaatattcgtgatattatttctgaaggacaagaagtt
attgttcaagtgaacaaagaagagcgcggcaataaaggtgctgcgttgacaacctttgtt
tccttagcgggaagttatttggtgatcatgccaaacaacccgcgtgcggggggcatttct
cgtcgcattgagggtgatgagcgtttggaattaaaagatgccttgagttctttggatgtg
cctgaaggtgtcggtttaatcgtgcgtaccgccggtgtaggtaaatcaccggaagaattg
caatgggacttaaaagtgctattgcaccattgggaggcgatcaaacaagcctcagaaagc
cgccctgcgccgttcttaattcaccaagaaagtgatgttatcgtgcgtgcgattcgcgac
tatttgcgtcgtgatatcggcgaaattctgattgatagcccgaaagtctatgaaaaagcg
aaagcacacatcaaattagtgcgtccggatttcattaatcgagtgaaattgtatcaaggc
gaagttccgctgttcagtcattatcaaatcgaatcccaaattgaatccgctttccaacgt
gaagtgcgtttaccttccggtggctctatcgtcattgacgccactgaagccttaacagcc
attgatattaactccgcacgttctacccgtggtggcgatatcgaagaaaccgcattaaac
actaaccttgaagccgcagatgaaattgcgcgtcaacttcgtttacgcgacttgggtggt
ttgatcgttatcgacttcatcgacatgacaccggttcgccatcaacgtgaagtggaaaac
cgcattcgcgatgccgtacgtcaagatcgcgcgcgtattcaaattagtcgtatttcccgc
ttcggtttgttggaaatgtcacgccaacgtttgagtccgtcattaggtgaatcctctcat
cacgtctgcccgcgttgccaagggaccggtaaaatccgtgataacgaatcactttcactt
tctatcttgcgtttattggaagaagaagcattaaaagaaaataccaaacaggttcacacc
atcgttccggtacaaatcgcttcttacttattaaacgaaaaacgtaaagccattcatagc
atcgaaaaacgccatgatgtcgatattatcgtggtaccaaacgaagcgatggaaaccccg
aatttcagcgtgttccgtgttcgtgatggcgaagaagtgaatgagttaagctacaattta
gcaaaattacatcaagatcaagatgaaacctttgccgctgaggaatcgttggtttctcgt
aatattgaagcgacaccggcagaaacaccggcggtggaaagtgcggcggtttctttggcc
attacaatgcctgcaccggagccggttgaacgtaaagtgccgaaagcaccttctttgtta
agccgtttatttgccgtgttaaaaggtttatttgcttctgagccaaaacaagaagaaaaa
aataaaaaagcacgttcgaataacagaaacagtaacaaccgtaatcgtcgcaatcaagat
cgtcgtaacaaccgtcgtgttcgcaacgaaaacgtggaaaacgttgttgaagaacaaagt
gcggataaatctgaggttagaaatcgtcatcaagatcgcaacgctaaacgtaatcgtaaa
cctgaggtgattgaagaaatcattaaacctgaatcttctaccccggttaccgaagaaaag
gctgaacctgcacaacgtcgtcaacgtcgtgacttacgcaaaaaagtccgcgtttatgat
gaggtaaatgacattcaagctgaccaagcagaaaatgtttcatttgttgaaaacgcgaat
gttgctcatgccccagaggaatccattgtttctgcagaagcagcagaaatctcaaatgaa
cctgaacgcaatcgtgataattctcgtcaacgtcgtttaccgcgtcatttacgtgtgaat
aaccaacgccgtcgtcgtaaccaacaggaaaaatcaccaatgccgttatttgctgcggta
gcctctcctgagctagccagcggtaaagtttggatcgatatgtcgcaagtaaatcaaccg
aaagaaacaccgttcttatcggttgatgaattgcttgagcaacaaaatcaatcaactgca
gaaaccgagaaaagcattacggttccggcattagatatgattgttgagaaagccaaaaat
gaagttcaaccgttaactgaatttattacccaaccggcaaatgagtctgttgagaaaaaa
attcaggcgtctttagaacgtttaaacaataacgtgacatcagaaccaactgcggcaatc
gcagaacagcttgaaccgaaagccgagcatgatgtgaaatttatggccgaaattgaccgc
acttatgtgttcaatggccgtattgggacattctctgcagtaactcataccaaagctgac
gcgacgttagctaaagcctcggatgagccaatcaagacatatccggttcaagaatggcag
gaatcccgctattatttctacgggaaaggcgctgctgggcatcatacggcaatcagccat
gtctacgcagaaccaacaaaaacagagtctgaaaactag
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