Aggregatibacter sp. oral taxon 513: J5A60_06830
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Entry
J5A60_06830 CDS
T08731
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agj
Aggregatibacter sp. oral taxon 513
Pathway
agj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5A60_06830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agj03400
]
J5A60_06830 (mfd)
Enzymes [BR:
agj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5A60_06830 (mfd)
DNA repair and recombination proteins [BR:
agj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5A60_06830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
SWI2_SNF2
UB2H
BioW
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUC05446
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All DBs
Position
complement(1424952..1428401)
Genome browser
AA seq
1149 aa
AA seq
DB search
MQTPFFHIEIPTQAQDHKILANILPGADSLAVSEIAAQFNGLTVVVTNDTRSAVRLEKEL
AQLSLLNVTFFPDWETLPYDSFSPHQDIISARLSALFHLQQCKQGIFILPIATLMQRVCP
PSYLQHRVLLINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRTFDVDTQRTLQEIDQINLLPAHEFPTDNQGIEFFRSQFRAAFGEIR
RDPEHIYQQISKGTLAAGIEYWQPLFFEEMATLFEYFPANTLFITGEQNQMQGERFYADA
EQRFESRRVDPMRPLLSPDKLWLRIDEVNRQLKNYPAIALKTEKVRSSARQKNLAITPLP
PLTIQSQQKEPLHQLRQFIEHFKGNILLIVETEGRRETLLSLLAPLKLKPKQIHTLAQAM
EEKLALMVSPLEHGFIIEQDVPLAIICESELLGERVQQRQRDKSRTVNPDTLIRNLAELQ
IGQPVVHLDHGVGRYGGLVSLENGGIEAEYLLLNYANDSKLYVPVASLHLISRYVGGADE
TAPLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQKGFAFRYDREEFQQFTATFP
FEETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKQVIQDLAEGKVDILIGTHKIIQGDV
QFHDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLTIKTFVRQTDELVIREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQ
LRGRIGRSHHQAYAYLLTPPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIESIGFSLYMELLERAVKALKEGREPSLDELTQQQTEIDLRMPSLLPEDYLG
DVNMRLSFYKRIAGAENTEALDELKVELIDRFGTLPQATRNLLQIAQLRLDLKPLNVIRL
DANAQGGFIEFAPNADLDPMIFLQLIQRNPAVYRFDGPHKFRFTKDLTDYKVRLEFVTDL
VKELIKKEG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactccattttttcacatcgaaattccaacccaagcacaagatcataaaatttta
gccaatattctgcccggcgcggatagccttgccgtgagtgaaattgcggcgcagtttaac
gggctaaccgtcgtggtgacgaacgatacccgaagtgcggtgcgtttagaaaaagaatta
gcgcaactgagcctacttaatgtcacctttttccccgattgggaaaccttgccttacgac
agtttttcgcctcatcaagatattatttctgcccgcttgagtgccttatttcacttacag
caatgcaagcaaggcattttcattttgccgattgccaccttaatgcaacgcgtttgcccg
ccctcttatttacaacatcgggtgttactgattaacaaaggcgaccgttttgttattgaa
acgcttcgtttgcaattggaaaaatcgggttatcgtgcggtggagcaagtgttggagcat
ggcgaatatgctgtgcgcggcgccttgttggatcttttcccaatgggaagtgcggtgcct
tttcgtttagatttctttgatgatgaaattgattccattcgcacttttgatgtggataca
caacgcacgttgcaggaaatcgatcaaatcaatttattgccggcgcacgaatttccaacg
gataaccaaggcattgaatttttccgtagtcaattccgcgcggcgtttggtgaaattcga
cgggatccggaacatatttatcaacaaatcagcaaaggcacgttggcggcagggattgaa
tattggcagcccttgttctttgaagaaatggcgaccttatttgagtatttcccggcgaat
acgctgtttattaccggcgagcaaaatcaaatgcagggtgagcgtttttacgccgatgca
gaacaacgttttgagagccgccgtgtggacccgatgcgtccgttattgtcacccgataaa
ctttggttgcgcattgacgaagtgaatcgtcagttaaaaaattaccctgccattgcatta
aaaacggaaaaagtgcggtcgtccgcacggcagaaaaatttggccattacgcccttaccg
ccactgaccattcaatcgcaacaaaaagaaccgttacatcagttacgccaatttattgag
cattttaaaggtaatattttacttatcgtggaaacggaaggtcgtcgtgaaaccttgtta
agcctgcttgcaccgctaaaactgaaaccaaaacaaattcataccttggcgcaagcaatg
gaagaaaaattggctttaatggttagcccgttggagcatggttttattattgagcaggat
gtgccccttgccattatttgtgaatcggaattgcttggcgaacgtgtgcagcaacggcag
cgggataaatcccgcacggtgaatcctgataccttgattcgcaatcttgccgaattgcaa
atcggtcagccggttgtgcatttggatcatggtgtggggcgctatggcggcttagtcagt
ttagaaaacggcggcattgaagcggaatatttgttgctcaattatgccaacgactcgaaa
ttgtatgtgcccgtagcatcgttacatttaatcagccgttatgtaggcggtgccgatgag
actgcgccgttgcacaagttaggctccgaagcctggggcaaagcgcgcagtaaagcggcg
gagaaaattcgtgatgtagcagcggagttattggatgtgtatgcgcaacgtgaagcgcaa
aaaggctttgcgttccgatatgatcgtgaggaattccaacaattcactgctacgttcccg
tttgaagaaacccatgaccaacttatggcaattaatgccgtgatttcagacatgactcaa
ccgaaagccatggatcgccttgtgtgtggcgatgtgggttttggtaaaacggaagtggcg
atgcgtgccgcctttttagcggtgatgaaccacaaacaggttgctgtgttggtgccgact
acattattggcgcaacaacatttcgataatttcaaagaccgctttgctaacttgccggta
aacgtggaaatgttatctcgctttaaaacggcaaaagagcagaaacaggtgattcaggat
ttagccgaaggtaaagttgatattctgattggcacccataaaattattcaaggtgacgtg
caattccatgatctgggtttgttgattattgacgaagaacaccgttttggcgtgcgccaa
aaagaaaaaatgaaacagctgcgcgcgaacatagatattcttactctgacggcaacgcca
attccacgtaccttaaacatggcgatgaatggtattcgcgatctttccattatttctaca
ccaccggcacgccgtttaaccattaaaacgtttgtgcgtcaaacggatgagttagtgatt
cgtgaagccattttgcgtgaaattttgcgtggcgggcaggtgtattatttgcataacgat
gtggcgagcatcgaaaatacggcagaaaaactgaccgcacttgtgccggaagcacgcgtg
attgtgggacacgggcaaatgcgcgaacgtgaattggaacgcgtgatgtcggatttttat
catcaacgttataacgtgctggtgtgttctacgattattgaaaccggtatcgatgtgccg
acggccaataccattattatcgagcgtgccgataattttggtttggcacagttgcaccag
ttgcgcggacggattgggcgttctcaccatcaagcctatgcgtatttgctcacaccacca
ccgaaactgatgacgaaggatgcgcaaaaacgcttggaagccctggaaagcctagataac
ctcggtgccggctttattttagccacccacgatttggaaattcgcggcgcaggggaattg
ctaggcaacgagcagagcggccaaattgaaagcatcggtttttctctttacatggaattg
ttagagcgtgcggtgaaagccttaaaagaaggtcgcgagccgtcattggacgaactgacg
caacaacaaactgagattgatttacggatgccgtcgctattgccggaagattatttgggc
gatgtgaatatgcgtttgtctttctataaacgtattgccggtgcggaaaataccgaggcg
ttggatgaattaaaagtggagcttatcgatcgtttcggaaccttgccacaagccacgcgg
aatctgttgcaaattgcgcaattacggctggatttaaaaccgctcaatgtcattcgcttg
gatgccaacgcgcagggtggattcatcgaatttgcgccgaacgctgatttagacccgatg
atctttttacagctaatccaacgcaatccggcggtttatcgttttgacggcccacataaa
ttccgctttaccaaagatttaacggactacaaagtgcggttagagtttgtgacggatttg
gtcaaagaattaattaagaaagaagggtga
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