Aggregatibacter sp. oral taxon 513: J5A60_07250
Help
Entry
J5A60_07250 CDS
T08731
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agj
Aggregatibacter sp. oral taxon 513
Pathway
agj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J5A60_07250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agj03021
]
J5A60_07250 (rpoD)
Transcription machinery [BR:
agj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J5A60_07250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YL1
RRN3
FAM161_N
Motif
Other DBs
NCBI-ProteinID:
QUC05528
LinkDB
All DBs
Position
1511317..1513182
Genome browser
AA seq
621 aa
AA seq
DB search
MDQNPQSQLKLLIAQGKEQGYLTYAEVNDSLPEELVDADQIEDIIQMINDMGIQVLETAP
DADDLMLNENITDEDVVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIA
KRIEEGINEVQSAIAAYPEAITYLIEQYDLVESGGVRLADLITGFVDPNVLSESETAELD
EFQSEEGEENVAAAEIDDESEDEEDSEESASDDSDSDNSIDPEVAREKFTALRQQHQKTL
EIIAKHGRTGKKAKDEIQALSDIFTQFRLVPKQFDTLVLSMRDVMKRVRHQERLIQRLVV
DNAKMPKSNFQKSFIGHETSDVWLVKALSAGKSWSEKLAQYENELRQAIAHLVQIEQDTQ
LTIPQIREIGERISQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ
EMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPL
DSATAQSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSETLRSFLDE
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccacaatctcaattgaaactactcatcgctcaagggaaagagcaaggt
tatttaacctatgctgaggtgaatgacagcctccctgaagaattagtcgatgcggatcaa
attgaagatattattcagatgatcaacgacatggggattcaagtgttggaaaccgcaccg
gatgcggatgatctaatgctcaatgaaaatatcaccgatgaagatgtcgttgaagaagcg
acccaagtattatccagcgtagaagcagaactcggtcgcacgactgacccggtacgtatg
tatatgcgcgaaatgggtagcgtagaattgctcacccgtgaaggtgaaattgatattgct
aaacgaattgaagaaggcatcaacgaagttcaaagcgctattgccgcttaccctgaagcc
attacctatctcattgaacaatatgatttggtagaaagtggtggcgttcgtttagctgac
ctaattaccggtttcgtggatccaaacgtattaagcgaatcagaaaccgcagaattagat
gaattccagtcagaagaaggcgaagaaaacgttgctgcagctgaaattgatgatgaaagc
gaagacgaagaagatagcgaagaaagcgccagtgacgacagcgatagcgataacagcatt
gatcctgaagtagcacgtgaaaaattcaccgcacttagacaacaacatcaaaaaacccta
gaaatcattgcaaaacacggtcgaaccggcaaaaaagcgaaagatgaaattcaggcatta
tctgatatattcactcagttccgcttagtgccgaaacaattcgatacgttagtgctctcc
atgagagatgtgatgaaacgtgttcgtcatcaagagcgtctgattcaacgccttgtggtg
gataacgctaaaatgccaaaatccaatttccaaaaaagctttatcggccacgaaaccagc
gatgtatggttggtaaaagccctttccgccgggaagtcttggtctgaaaaactcgcccag
tatgaaaatgaattgcgccaagcgattgctcatttagttcaaattgaacaagacacgcag
ttgactattccgcaaattcgagaaattggtgaacgtatctcacaaggtgaactcaaagcc
cgccgtgcgaaaaaagaaatggtggaagcaaaccttcgtttggtgatttccattgccaaa
aaatacaccaaccgtggcttacaattccttgatttaattcaagaaggcaacatcggttta
atgaaagccgtagataaatttgaataccgtcgtggttacaaattctcaacttatgccact
tggtggattcgtcaggcaattacccgttctatcgcagaccaagcacgtactattcgtatt
ccggtgcatatgattgagaccatcaacaaactcaatcgtatttctcgccaaatgttacaa
gagatgggacgcgaagctacaccggaagaattagcggaacgcatgggcatgccggaagac
aaaatccgtaaagtgctgaaaattgccaaagaaccgatttccatggaaaccccaatcggt
gatgacgatgattcccatttaggtgatttcatcgaggactctaccttagagcttcctctg
gactctgccaccgcacaaagcttaaaagccgcgacacacgaagtgttggaaggcttaacg
ccgcgtgaagcgaaagtgcttcgtatgcgtttcggtatcgacatgaacaccgatcacaca
ttagaagaagtcggcaaacaatttgacgtgacccgtgagcgtattcgtcaaatcgaagca
aaagcactacgcaaattacgccacccgagccgttccgaaactttacgcagtttcttggac
gagtaa
DBGET
integrated database retrieval system
