Actinobacillus genomosp. 2: NYR60_05685
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Entry
NYR60_05685 CDS
T09470
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
agk
Actinobacillus genomosp. 2
Brite
KEGG Orthology (KO) [BR:
agk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
agk03009
]
NYR60_05685 (srmB)
Enzymes [BR:
agk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR60_05685 (srmB)
Ribosome biogenesis [BR:
agk03009
]
Prokaryotic type
rRNA helicases
NYR60_05685 (srmB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WGE31365
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All DBs
Position
complement(1164308..1165645)
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AA seq
445 aa
AA seq
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MTTETPLMTFEELDLSPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTA
AFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAY
QNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAA
ETRWRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKT
KLLARLITTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKD
GVVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHD
YKLLGKIKRYTEELLKARVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAK
VKVRHKDTKNIGKRRKPASEVAKSA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgaaaccccattaatgacctttgaggaattagatttatcccctcaactgtta
aaagctctcaataaaaaaggctacaaacgcccgaccgccgtacaagcggaaaccattccg
catgcgctggacggacgtgacttacttggctcggcaccaactggcaccggcaaaaccgct
gcatttttattgccagcgattcaacatttattggattacccacgccgtaaaccgggtgca
cctcgtattttaattttaacgccgactcgtgaacttgcgatgcaagtggcggaagaagct
caggcttttgccgaatttaccaaacttagtattgcgacgattaccggcggtgtggcgtat
caaaaccacggtgaagtgtttaacagcaaccaagatattgtggtcgcgacaccgggacgt
ttaatgcaatatatcaaagaagaaaattttgactgccgtgcggtagagattttgatcttt
gatgaagcggaccgtatgttacaaatgggctttggtcaagatgcggaaaaaattgcagcg
gaaacccgttggcgtaaacatacgtggttattctcagcaacgttggaaggtgagctatta
gtggattttacagatcgcattttggataacccgttaaaaattgatgcggaaccaagccgc
cgtgagcgtaaaaaaatccaacaatggtattaccatgcggataacttagaacacaaaact
aaattgcttgctcgtttaattactacgatggaaatggaaaaagcgattgtctttgttcgc
cgccgtgaagatgtgcgtgagttaagcgatacgttacgtaaacgtggcttacgttcgact
tatttagaaggcgatatggcacaaactcagcgtaaccaagcgatcactcgtttgaaagac
ggtgtagtgaatgtgttggtagcgacggatgttgccgcgcgtggtattgatattgatgat
gtcgattatgtgattaacttcgacttaccgtacagtgcagatacctatttgcaccgtatc
ggtcgtaccgctcgtgctggtaaaaaaggatcggcgatttcgttggttgaagcgcatgat
tacaaactgttaggcaaaatcaaacgctatactgaagagttgttaaaagcgagggtgatt
gaaggtttagagccgcgtaccaaagcaccgaaagatggcgagttgaatactacgaccaaa
aaagaaaaagcacgcattaaaaaacgcaaagaagcgaaaaaagaagcagcaaaagccaag
gtaaaagtgcgtcataaagataccaaaaatattggtaaacgtcgtaaaccggcttcagaa
gtggcaaaatctgcgtaa
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