Actinobacillus genomosp. 2: NYR60_07185
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Entry
NYR60_07185 CDS
T09470
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agk
Actinobacillus genomosp. 2
Pathway
agk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR60_07185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agk03021
]
NYR60_07185 (rpoC)
03400 DNA repair and recombination proteins [BR:
agk03400
]
NYR60_07185 (rpoC)
Enzymes [BR:
agk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR60_07185 (rpoC)
Transcription machinery [BR:
agk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR60_07185 (rpoC)
DNA repair and recombination proteins [BR:
agk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR60_07185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WGE31641
LinkDB
All DBs
Position
complement(1428726..1432997)
Genome browser
AA seq
1423 aa
AA seq
DB search
MKDLVKFLKAQSKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFLDAEERWGDEFEAK
MGAEGIQALLRDMDLEHQCEMMREELQETNSETKRKKITKRLKLLEAFQQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREEPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNAKGEGMYFLDPREAEKAYRT
GQAELHARVKVRITEYVKNEASELVPETKLLDTTIGRAILWMIAPKGMPFKVFNQTLGKK
AISKLINESYRRLGLKESVILADQIMYTGFAYAARSGASVGIDDMVIPAQKHEIIRAAEA
EVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIPRNTLIDEKWCDVIDAESVDVIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKEGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKNDGAEVAVGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDAQGNDILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVSRVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRAKKRNQPEQAV
AFEAPVAKANGFATDADIEAEFEFVADDATQSLAALLNAGDEE
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtaaagtttttaaaagcacaatcgaaatcaaatgacgattttgatgta
attaaaattggtttagcatcaccggataaaatccgttcttggtctttcggtgaagtaaaa
aaaccggaaaccattaactaccgtacctttaaacctgagcgtgatggtcttttctgtgca
cgtattttcggaccggtaaaagattacgaatgtttatgcggtaaatataaacgtttaaaa
caccgtggcgtaatctgtgaaaaatgtggcgttgaagttactcaaactaaagtacgtcgt
gaccgtatgggtcatatcgaacttgcttgtccggtggcacacatttggttcttaaaatca
cttccgtcccgtatcggtttaatcttagatatgccattacgtgatatcgaacgtgtactt
tacttcgaatcttatgtggttactgagccgggtatgaccgatttagaaaaaaatcagtta
ttaaccgaagaacagttcttagacgcagaagagcgttggggcgatgagtttgaagcgaaa
atgggtgcggaaggtatccaagcacttttacgtgatatggatttagagcatcaatgtgaa
atgatgcgtgaagagttacaagaaactaactctgaaacaaaacgtaaaaaaatcacaaaa
cgcttaaaattattagaagcattccaacaatctggcaacaaaccggagtggatggtaatg
accgtattaccagtgcttccaccagatttacgtccattagtaccacttgatggtggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgcgtgatcaaccgtaacaaccgttta
aaacgcttattagatttagtcgcaccggacatcatcgtacgtaacgaaaaacgtatgtta
caagagtctgttgatgcgttattagataacggtcgccgtggtcgtgcgattacaggttct
aacaaacgtccattaaaatctcttgcagatatgatcaagggtaaacaaggtcgtttccgt
cagaacttattaggtaaacgtgtggactattcaggtcgttcggtaatcaccgtaggtcct
tacttacacctacaccaatgtggtttaccgaaaaaaatggcattggaattattccgtccg
tttatttactctaaattagaatctcgtggcatagcttcaacaatcaaagctgcgaagaaa
atggttgaacgtgaagaaccgatcgtatgggatatccttgcggaagttattcgtgaacac
ccaattttattaaaccgtgcgccaacacttcaccgtttaggtatccaagcgtttgagcca
atcttaatcgaaggtaaagcaatccagttacacccactcgtttgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggtacacgtaccattaacacttgaagctcagttagaa
gctcgtgcgttaatgatgtcaaccaataacgtactttcaccggcgagtggtgacccgatt
atcgtaccttctcaggacgttgtattaggtctttactatatgactcgtgagaaagtgaat
gcgaaaggtgaaggaatgtatttccttgacccacgtgaagcagaaaaagcataccgtaca
ggtcaagctgaattacacgcacgtgttaaagttcgtattactgaatacgtgaaaaatgaa
gcgagtgaattagttccagaaactaaattattagataccacaatcggtcgtgcaatctta
tggatgatcgcaccgaaaggtatgccgtttaaagtattcaaccaaacgttaggtaaaaaa
gcgatttcaaaattaatcaatgaaagttaccgtcgtttaggtttaaaagaatctgtaatt
cttgctgaccaaatcatgtataccggtttcgcatacgctgcgcgttcaggtgcatcagtt
ggtatcgatgatatggttattccggcgcaaaaacacgaaattattcgtgcggcagaagca
gaagtggcagagatccaagaacaatttaactcaggtcttgtaactgcaggcgaacgttat
aataaagtaatcgatatttgggcagcggcaaacgaacgtgttgcaaaagcaatgatggaa
aacctttcaacggaagaagtgatcaaccgtgaaggtaacccggaaaaacaagcgtcattc
aacagtatctttatgatggctgactcgggtgcgcgtggttctgcagctcagattcgtcag
ttagcaggtatgcgtggtcttatggctcgtccggacggctcgatcatcgaaacaccaatt
accgcaaacttccgtgaaggtctgaacgttcttcagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggataccgcattaaaaacagcgaactcaggttacttaacacgtcgt
ttagtagacgtagcacaagacttagtaatcactgaagatgactgtggtacacacgaaggt
atcgtgatgactccgttaatcgaaggtggtgacgttaaagaagcattacgtgatcgtgta
ttaggtcgtgtggttgcagaagacgtattaaaaccgggtacggaagaagtattaattcca
cgtaacaccttaatcgatgagaaatggtgtgatgtgattgatgcggaatctgtggacgta
atcaaagtacgttcggtggtaacttgtaacacagacttcggtgtgtgtgcgaaatgttac
ggccgtgaccttgctcgcggtcaccttatcaaccaaggtgaagcagtgggtgttatcgcg
gcacaatcaatcggtgaaccaggtacacagttaaccatgcgtacgttccatatcggtggt
gcggcttctgcggcagcaaaagaatctagcatccaagtgaaaaacgcaggtacgattaag
ttaactaacgctaaatttgtaactaacaaagaaggcaaaatcgtattaacttcacgtaac
acagaattaactgtaatcgacacattcggccgtaccaaagaaaactataaagtaccttac
ggtgcagtgctttctaaaaacgacggtgcagaagttgcagtaggtgaagtcgttgcgaac
tgggatccgcatacaatgccagtcatctcagaggtaagcggtcgcatccaattcagcgac
atcgtagatggcttaaccgttactcgtcaaaccgacgaattaaccggtttatcatctatc
gtggtgcaagatgtgggtgagcgtgcaacagcaggtaaagatttacgtccggcattacgt
ttagtagatgcacaaggtaacgatatcttaattccaggcacagacgttgcagcacaatac
ttcttaccgggtaaagcaatcgtaaccttagatgacggtgcggaaatcgaagtcggtgaa
gcattagcacgtattccacaagaatctgtgggtacaaaagatattaccggtggtcttcca
cgcgtagcagacttattcgaagcacgtaaaccgaaagagccggcaatccttgctgaaatt
tcaggtatcgtgtcattcggtaaagaaactaaaggtaaacgtcgtttagttatcacgccg
gcggaaggcgaagcattcgaagaaatgattccaaaatggcgtcagctcaacgtattcgaa
ggcgagatggtacaacgtggtgacgtaatctctgatggtgcagaaacgccgcacgatatc
ttacgtttacgtggcgttcacgctgtaacagattacatcgtaaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagttatcgttcgccaaatg
ttacgtaaagcggttattactaacgcatacgacagcgaattcctcgaaggggaacaagtt
gaagtttcacgcgtgaaaattgctaaccgtaaacgtgcagaagaaggcaaaccgcttgtt
gagttcgaacgtgaattacttggtattaccaaagcgtcgcttgcaactgagtcatttatc
tcagcagcgtcgttccaagaaaccacacgtgttcttactgaagcagcggttgctggtaaa
cgtgatgaattacgaggcttgaaagagaacgtaatcgtaggtcgtttaatcccagcgggt
acaggtttcgcatatcaccaaaaccgtgcgaaaaaacgtaaccagccagaacaagcggtc
gcttttgaagctccggttgcaaaagctaacggattcgcaaccgatgctgatatcgaagca
gaattcgaattcgttgcagacgatgcaactcaaagcctagcagcgttattaaacgcaggt
gatgaagagtaa
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integrated database retrieval system
