Actinobacillus genomosp. 2: NYR60_08735
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Entry
NYR60_08735 CDS
T09470
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agk
Actinobacillus genomosp. 2
Pathway
agk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR60_08735 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agk03019
]
NYR60_08735 (rne)
03009 Ribosome biogenesis [BR:
agk03009
]
NYR60_08735 (rne)
Enzymes [BR:
agk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NYR60_08735 (rne)
Messenger RNA biogenesis [BR:
agk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NYR60_08735 (rne)
Ribosome biogenesis [BR:
agk03009
]
Prokaryotic type
rRNA processing factors
NYR60_08735 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
WGE31915
LinkDB
All DBs
Position
1744352..1747330
Genome browser
AA seq
992 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVIVVPTESMETP
HFSVYRLRENEVLPTLSYDLAKHYHTHEEDAQMNIHTVSEEALVTRNEPVITVESVLQSS
ELNLQPAPTPVEPAKPSLLSRLIEKVKSFFASEEQVEEKPKPKSRNQRDRRNRRERANRA
ERQERKQTQQQQEEQKAQRQERNQERVEAKKARRQVVEEVAGGQEAQAESRSNNKETAVT
ERRQRRDLRKKVRVDNVENTAVTAQVVEEKVQTVEQIQPLITQSEQPLVAEDRQDVRENG
RQRRLPRHLRVGNQRRRENNNRKENAVAAMPLAAAVASPEMASGKIWVKFSEPASTSKSN
SKAEEKLRFLSVDEMLEQQTSEAVTEPAIEMNIEDNASSVAPIVGFIKQSSDRDLVKENK
ERLHHHAEESEQADEQLVEKAMAKHVAPLGGFVSQHSDRDLVKEKNERVQKYQAKATPAP
AVEGINVEVIKVPVSNYQSEYSFNGNLGTFSRVAHTKSAMTVASAPDRVLEMATVTEWTQ
SKYYFYGKGFGGHSSAVSHVHSAPRVASIDNE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaaaaagaagagttgcgagttgcactcgttgat
gggcaacgtttgttcgatttagatatcgaaagcccaggacacgagcaaaaaaaatcgaat
atctacaaggggaaaatcacccgtgttgagccaagtcttgaagccgctttcgttgattac
ggtgcagagcgtcacggtttccttcctttaaaagaaatttcacgtgaatactttcctgcg
gattatgtattcaacggtcgcccgaatatcaaagatattatcaaagaagggcaagaagtt
attgtccaagtgaataaagaagagcgtggtaacaaaggtgcggcattgaccacttttatc
tcactagctggtagttatttagttttaatgccaaataatccacgtgccggtgggatttct
cgccgtattgaaggtgatgagcgcttagagttaaaagaagcgttagattgtctagatgta
ccggaagacgtaggtttaatcgtgcgtactgctggtgtaggcaaatcgccagaagagctt
caatgggacttaaaagtgttgttacaccattgggaggcaattaaaaaagctgcggaatct
cgtccggctccattccttatccatcaagaaagtgatgtgattgttcgtgcgatccgtgat
tatctccgccgtgatatcggtgaaatcttaattgataacaaaaaaatcttcgaaaaagcg
aaaaaccatattcgtctagtgcgtccagatttcatcaatcgagtacgtctatatgaaggt
gaagtgccgttattcagccattatcaaatcgaatcacaaatcgaatcggcgttccaacgt
gaagtgcgtttaccgtcaggcggttcaatcgtgattgacgtaactgaagcattaacggcg
attgatattaactcatcacgctcaacccgtggaggtgatatcgaagagactgcgttaaat
accaacttagaagcggcggacgagattgctcgtcaattacgtttacgtgacttaggtggt
ttgattgtcatcgactttatcgatatgactccggtgcgccaccaacgtgaagtggaaaac
cgtatccgtgaagcgacacgccaagaccgtgcgcgtattcagttcggtcgtatttcacgt
ttcggtttattagaaatgagccgtcagcgtttaagtccatcactcagcgaagcatcaagc
cacgtttgccctcgctgtcaaggtacgggtaaagtgcgtgataacgaatcgattgcactt
tccattttacgtttattagaagaggaagcgattaaagaaaatactgcacaagttcatact
atcgtgccggtgcaaattgcgtcttatttactcaatgaaaaacgtaaagcaatttcaagc
atcgaaaaacgtcacgatgtacaagtgattgttgtaccaaccgagagtatggaaacacca
catttcagcgtataccgtttacgtgaaaatgaagtattaccgacacttagctacgattta
gcgaagcactatcatactcacgaagaagatgctcaaatgaatattcatacggtttcagaa
gaagcattagtgacacgtaatgaaccggtaattaccgttgaatctgtattacaaagtagc
gagctaaatcttcaaccggcgccgacaccggtggagccggctaaaccgtcattacttagc
cgtttgattgagaaggtgaaaagtttctttgcatcagaagaacaagttgaagagaaaccg
aagccgaaatctcgtaaccaacgtgatcgccgaaatcgtcgcgaacgagcaaatcgtgcg
gaacgccaagagcgtaaacagacacagcaacaacaggaagagcaaaaagcacaacgtcag
gaacgtaatcaagaacgtgtggaagcgaaaaaagctcgtcgccaagtagttgaagaagtg
gctggtgggcaagaggctcaagcggaatcacgttcaaacaataaagaaaccgcagtgacg
gagcgtcgccagcgtcgtgatttacgtaaaaaagtgcgtgtggacaacgtggaaaatacg
gctgttactgctcaagtcgtggaagaaaaagttcaaactgtagagcaaattcaaccgctt
attacacaatctgaacaaccgttagtggctgaagatcgccaagacgtacgtgaaaacggg
cgtcaacgtcgtcttcctcgtcatcttcgtgttggtaaccaacgtcgccgtgaaaacaat
aatcgtaaagagaacgcggttgcggcaatgcctttagcggcagctgttgcttctccggaa
atggcaagcggtaagatttgggtgaaatttagcgaaccagcatcaactagcaaatcgaat
agcaaagcggaagaaaaactgcgtttcttatcggtagatgaaatgctcgaacaacaaact
agcgaggcggtaactgaacctgctatcgaaatgaatattgaggataatgcaagttctgtt
gcaccgattgtcggctttattaaacaatcttccgatcgtgatttagtgaaagaaaataaa
gagcgtttacatcatcacgctgaagaaagtgaacaagcggatgagcaattagtcgaaaaa
gcaatggcaaaacatgttgctccgctaggtggctttgtgtcacaacattctgatcgtgat
cttgttaaagaaaagaatgaacgagtacaaaaataccaagctaaagcgacaccagctcct
gctgttgaaggtattaatgtagaagtaattaaagtgccggtatcgaattaccaaagtgag
tacagttttaatggtaatttaggtacattttctcgtgtagcacatactaagtcagcaatg
acggtcgcttctgcaccggatagagtgttagaaatggcaacggtaacagaatggacacaa
tccaaatattatttctatggaaaagggtttggcgggcattctagtgcagtgagccatgtt
cattcagctccacgtgttgcaagtatagataatgaataa
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