Actinobacillus genomosp. 2: NYR60_08890
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Entry
NYR60_08890 CDS
T09470
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agk
Actinobacillus genomosp. 2
Pathway
agk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NYR60_08890 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agk03021
]
NYR60_08890 (rpoD)
Transcription machinery [BR:
agk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NYR60_08890 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
DUF4611
Motif
Other DBs
NCBI-ProteinID:
WGE31946
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Position
1775949..1777805
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AA seq
618 aa
AA seq
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MEQQLEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMGIKVLET
APDTDDLMLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINEVQCAVAEYPEALTDLIGFYAQVEEGTMRLSDLVTAFVDPNVQADEMLAD
LDVDLDDEEAEDVADVDDENEEEEGDSSADTGDDNSIDPELAREKFYALREQHEKALQAI
QKHGRSHKKSREHIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRAEERQIQRYAVEYA
QMKKADFLKLFQGNETSEEWIEKAINAKKGAAPKLANYIDQIRVNIANLQRMEQNTGLTI
AQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQEMG
REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA
TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSETLRSFLDD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaattagaacagcaatcccaattagaacttctgattgcccaagggcgtgaa
caggggtatttaacgatttcggaagtacacgaccacttaccggaagagttggttgatgcg
gagcagattgaagatattattcaaatgatcaacgatatggggatcaaggttttagaaact
gccccagataccgatgatctgatgcttgcagaaaatatcgcagatgaagacgtggttgaa
gaagcaacaaaagtgctttcgacagttgaatcggaattaggacgaacaactgatccggta
cgtatgtatatgcgtgaaatgggaacagtcgaattacttacccgtgaaggcgagattgat
attgcaaaacgtattgaagagggtattaacgaagtacagtgtgccgttgcagaatatcca
gaagccttgaccgatttaatcggtttctacgctcaagtggaagaaggtacaatgcgttta
tcagatcttgtaacagctttcgtggatccaaacgttcaagcggatgaaatgttagcagac
ttagatgtcgatttagatgatgaagaagctgaagatgttgctgatgttgatgatgagaac
gaagaggaagaaggcgatagcagtgcggatacaggtgatgataactctattgaccctgag
cttgcacgtgaaaaattctatgcgttacgtgaacagcatgaaaaagcgttacaagcgatt
caaaaacacggtcgtagtcataaaaaatcaagagaacatatccaagcactttcagatatt
ttccgtgagttccgtttagtaccgaagcagtttgatttacttgttgaatctatgcaaaaa
atgatgaaacaagtgcgtgcggaagaacgccaaattcaacgttatgcggtggaatatgca
caaatgaagaaagcggatttcttgaaattgttccaaggtaatgaaacctcggaagaatgg
attgaaaaagcaatcaatgcgaaaaaaggtgctgcaccaaaactagcgaactatattgac
caaattcgagttaatatcgctaatttacaacgtatggagcaaaataccggtttaacgatc
gcacaaattcgtgaaatcggcggccgtattgcaaatggtgagttaaaagctcgccgtgct
aaaaaagagatggtggaagcaaacttacgtttagtaatctcgattgcgaagaaatatacc
aaccgtggtttgcaattcttagatttgattcaggaaggtaatatcggtttgatgaaagcg
gtagataagtttgaatatcgccgtggttataaattctctacttatgcgacatggtggatt
cgtcaggcgattactcgctcaattgctgaccaagctcgtacgattcgtattcctgtacat
atgatcgaaacgattaataaactgaatcgtatttctcgtcaatgtttacaagaaatggga
cgtgaggcaacgccggaagagttagcagagcgtatgggcatgccggaagataagattcgt
aaagtattgaagattgcgaaagaaccaatttcaatggaaaccccgattggtgatgatgat
gattcacatttaggtgactttattcaagatgaaagccttgaattaccgttagattcagca
accgcagaaagtttacgtatcgcaaccaatgaagtgttagaaggtttaacacctcgtgaa
gcaaaagttttacgtatgcgtttcgggattgatatgaatactgaccatacccttgaggaa
gtcggtaaacaatttgatgtaacacgtgagcgtattcgtcagattgaagcgaaagcgtta
cgcaaacttcgtcatccgagccgttcggaaacgttacgtagtttcttagatgactag
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