Akkermansia glycaniphila: PYTT_0451
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Entry
PYTT_0451 CDS
T04551
Name
(GenBank) 3 prime rnase: vacb and rnase ii family 3'-5' exoribonucleases
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYTT_0451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agl03019
]
PYTT_0451
03016 Transfer RNA biogenesis [BR:
agl03016
]
PYTT_0451
Enzymes [BR:
agl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PYTT_0451
Messenger RNA biogenesis [BR:
agl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PYTT_0451
Transfer RNA biogenesis [BR:
agl03016
]
Prokaryotic type
tRNA degradation factors
PYTT_0451
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
SEH75258
UniProt:
A0A1H6KJ26
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All DBs
Position
I:complement(554101..556302)
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AA seq
733 aa
AA seq
DB search
MNQSLEDLLFACMGKPGYQPQDQSELARSLGLVSRERAHLRQLLRDWEAAGKVVRLSKAK
YALRKAEGSGAVEGRIRKLRSGKVLFIPSPAALPGLRSLLHADSLVELVVPEFRSGGAMD
GDKVLASVRLSVPKGWRRFRKGKPTMDDLQVEVRVDKVLERKRGTWVGVYQPGGRFGFVL
GDGQTSPERVKLVEEVPGNLLAGQLATVEALSYPKGKMEATGRVTEVLGWPEAEGVDITA
VIRKYELQEEFPEEVIAAVSRLSEEIPQEVLARREDWCGRPVITIDPATARDFDDAIHVR
KLEKGWELAVHIADVSHYVQPGSALDAEARRRGNSTYLPDRVLPMLPPKLCDHICSLRPG
EMHLTKMCLMQVSEKGKVVKMRFADAVISSHRRFSYEEAAEVLLHGASCGDAEVDAMLGE
ALTLSRLLRKRRMEAGALDLEFPDVRVLLDAHGHTTGVECEVSDESHQLIEEFMLAANEC
VAATLKTKSIPTIFRVHEDPDEGKMFEFASLARQYGLKVGDLRRRDDLIVLMQELKGHPD
ESILKLALLRSMMRARYDTKPLGHFGLAKPDYCHFTSPIRRYADLVVHRSLARVIDPEGK
APRLPDAVSLQQAADHISETERNSANAEQEANMLKLYEWLESQCEAGHPQEWEAIVTDAR
PLGVMVEVPMLQVRGLIPSELFTGGKWWFESFMPRWSNRDGKVLQAGMRVMVVPAKVDRA
NRWIDWKMAKLPE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagtctctggaagatcttctttttgcctgtatgggcaagcccgggtatcagccg
caggatcagtcggaattggctcgcagtctcggccttgtgtcgcgtgagcgtgcgcatctc
cggcagttgctccgggattgggaggctgcggggaaggtggtgcggttgagcaaggcgaag
tatgctttgcggaaggcggaggggagcggagccgtggaaggccgtattcgcaagcttcgc
agcgggaaggtgctgtttattccttctccggcggctttgccgggcttgcgttcgctgttg
catgcggatagtttggtggagctggtcgtgccggagtttcgcagcggcggcgcgatggat
ggtgataaagtgctggcttcggtgaggctttccgtgccgaagggttggcgcaggttccgg
aaggggaagccgacgatggacgatttacaggtggaggtgcgggtggataaggtgctggag
cgcaagcgcggcacatgggtgggtgtgtatcagcccggcggcaggttcggttttgtgctg
ggagatggacagacgtctcccgagcgggtgaagctggtggaggaggtgcccggcaatttg
ctggccgggcagttggcgacggtggaggctctttcctacccgaaggggaagatggaggcg
acggggcgcgtgacggaggtgctgggctggccggaggcggagggggtggatattacggcg
gtgattcggaagtatgagcttcaggaggagtttcccgaggaggtgattgcggcggtgtcg
aggctttccgaggagattcctcaggaggtgctggcaaggcgggaggattggtgcggccgc
ccggtgattacgatcgatccggcgacggcacgggatttcgacgatgctattcatgtgcgg
aagctggagaagggctgggagctggcggtgcatattgcggatgtgtcgcattatgtgcag
ccgggttctgcactggatgcggaggcgcggcggagggggaattcgacgtatcttcccgac
cgtgtgctgccgatgctgccgccgaagctgtgcgaccatatttgcagtctgcgccccggc
gagatgcatttgacgaagatgtgcctgatgcaggtttcggagaaggggaaggtggtgaag
atgcggtttgccgatgcggtgatcagttcgcacaggcggttttcctatgaggaggcggcg
gaggtgctgctgcacggcgcgtcgtgcggcgatgcggaggtggatgcgatgctgggcgag
gcgttaacgctgtcccgcctgttgaggaagcggaggatggaggcaggggcgctggatttg
gagtttcccgatgtgcgggttcttctggatgcccacgggcatacgacgggggtggagtgc
gaggtttccgacgagagccaccagttgattgaggagttcatgctggcggccaacgagtgt
gtggcggcgacgttgaagacgaagtcgattccgacgattttccgcgtgcatgaggatccc
gacgaggggaagatgttcgagttcgcttcgctggcgaggcagtacggcctgaaggtgggg
gatttgcggaggcgggatgatttgattgttttgatgcaggagctgaaggggcatcccgac
gagtctattttgaagcttgcgctgctgcggagtatgatgcgcgcacggtacgatacgaag
ccgctcgggcatttcgggctggcgaagccggattattgccattttacgagtccgatccgc
cggtatgcggatttggtggttcaccgttcgctggcgcgggtgatcgatccggaagggaag
gctccgaggctgccggatgcggtttcgctgcagcaggcggcggatcatatttccgagacg
gagcggaattccgccaatgcggagcaggaggcgaatatgctgaagctttacgagtggctg
gagagccagtgtgaagccgggcatccgcaggagtgggaggcgatcgtgacggatgcccgc
ccgctcggcgtgatggtggaggtgccgatgctgcaggtgcgcgggttgattccttccgag
ctgtttaccggaggcaagtggtggttcgagagtttcatgccccggtggagcaaccgggac
gggaaggttctgcaggcgggtatgcgggtgatggttgtgcctgccaaggtggatcgggcg
aaccgctggatcgactggaagatggcgaagctgccggagtga
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