Akkermansia glycaniphila: PYTT_1152
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Entry
PYTT_1152 CDS
T04551
Name
(GenBank) dead/deah box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYTT_1152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agl03019
]
PYTT_1152
03400 DNA repair and recombination proteins [BR:
agl03400
]
PYTT_1152
Enzymes [BR:
agl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYTT_1152
Messenger RNA biogenesis [BR:
agl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYTT_1152
DNA repair and recombination proteins [BR:
agl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PYTT_1152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
RQC
ResIII
DUF5984
Motif
Other DBs
NCBI-ProteinID:
SEH84300
UniProt:
A0A1C7PBI3
LinkDB
All DBs
Position
I:1337564..1339705
Genome browser
AA seq
713 aa
AA seq
DB search
MPPQNAHLDPLDTLQATFGFSSLRPGQDSVVQAVMAGKDTLAIMPTGGGKSLCYQLPALC
RPGLTLVVSPLIALMKDQVDALEQRGIPAVMINSTLTAEEHRERLRALRQQTCRILYVAP
ERFAQDSFMSLLAETPISLIAIDEAHCLSQWGHDFRPDYLRLGRVIEQLGHPQTIALTAT
ATRQVREDILNHLRLRDPAVIISGFARDNLTFRTTPCDTQQEKLLRLHQLIREWKTGIIY
CSTRKKVMTVFGDLKEHGINAIAYHAGLTDAEREYAQNQFINREADIAVATNAFGMGIDR
ADVRFVAHYEIPGSVEAYYQEAGRAGRDGRPAHCELLFNHADLRTQEYFFEGSNPGYNTI
ADIYTWLRRHSDPDTHTIEATIDEIADSLRIKNTMGISSAIATLVHAGAIQRYDIPGKTA
RGTRICHPDLPATRLGIDREHLREKETRDHAKIDTVTQYAYSHTCRQQWILDYFGEPDPQ
PCGRCDICLPPDAASYPALEGEPLLTVRKALSGIARASRRRSDGTWEAIFGRNKIMQMLR
GVQSPAIAHMTDLSTYGILKNLSENAIKALFRCLAKAGCLATTGGDRPLLTLSRRGHDIM
TGQTPATIPTTGWAGNITHSPMRGTTSSRTIDGIALGQPDRALYDLLSALRKNLAHEQGI
PPYRIMTNETLLALSAVKPLTAEAAMPIKGIGPATAEKYLPHFLELIAEYLEG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgccaccacaaaacgcccacctcgacccgctcgacaccctgcaggccaccttcggcttc
agctccctccgccccgggcaggacagcgtcgtccaggcagtcatggccgggaaggacacc
ctcgccatcatgcccaccggcggcggcaaatccctctgctaccagctccccgccctctgc
aggcccggcctcaccctcgtcgtcagccccctcatcgccctcatgaaagaccaggtcgat
gccctcgaacagcgcggcatccccgccgtcatgatcaacagcaccctcaccgctgaagaa
caccgcgaacgcctgcgcgccctccggcagcaaacctgcagaatcctctacgtcgccccc
gaacgcttcgctcaggactccttcatgagcctcctcgcggaaacacccatcagcctcatc
gccatcgacgaagcccactgcctcagccagtggggccacgacttccgccccgactacctc
cgcctcggccgcgtcatcgaacaactcggccacccccaaaccatcgccctcaccgccacc
gccacccgccaggtccgggaagacatcctcaaccacctccgcctccgcgaccccgccgtc
atcatcagcggcttcgcccgcgacaacctcaccttccgcaccactccttgcgacacccag
caggaaaaactcctccgcctccaccagctcattcgcgaatggaaaacaggcatcatctac
tgctccacccgcaaaaaagtaatgaccgtcttcggcgacctcaaagaacatggcatcaac
gccatcgcctaccacgccggactcaccgacgccgaacgcgaatacgcccaaaaccaattc
atcaaccgagaggcggacatcgccgtcgccaccaacgccttcggcatgggcatcgaccgt
gcggacgtccgcttcgtcgcccactacgaaatccccggcagcgtcgaagcatactaccag
gaagcaggccgcgccggacgcgacggccggcccgcccactgcgaactcctcttcaaccac
gccgacctccgcacacaggaatacttcttcgaaggctccaaccccggctacaacaccatc
gcagacatctacacctggctccgccgccacagcgaccccgacacccacaccatcgaagcc
accatcgacgaaatagccgactccctccgcatcaaaaacaccatgggcatcagctccgcc
atcgccacactcgtccatgccggagccatccaacgctacgacatccccggcaaaacagcc
cgcggcacccgcatctgccaccccgacctccccgccacccgcctcggcatcgaccgcgaa
cacctccgcgaaaaagaaacccgcgaccacgccaaaatcgacaccgtcacccaatacgcc
tacagccacacctgccgccagcagtggatccttgactacttcggcgaacccgacccccag
ccctgcggccggtgcgacatctgcctcccacccgatgccgcctcctaccccgccctcgaa
ggcgaacccctcctcaccgtccgcaaagccctcagcggcatcgcacgggcctcccgtcgc
cgcagcgacggcacatgggaagccatcttcggccgcaacaaaatcatgcaaatgctccgt
ggagtccaaagcccagccatcgcccacatgacggacctcagcacctacggcatcctcaaa
aacctcagcgaaaacgccatcaaagccctcttccgctgcctcgccaaagcaggctgcctc
gccaccaccggaggcgaccgccccctcctcaccctcagccgtcgcggccacgacatcatg
accggtcaaacccccgccaccatccccaccaccggctgggcgggcaacatcacccacagc
cccatgcgcggaacaacctcctcccgcaccatcgacggcatcgccctcggccaacccgac
cgcgccctctacgacctcctctccgccctccggaaaaacctcgctcatgaacagggcatc
ccgccctaccgcatcatgaccaacgaaaccctcctcgccctctccgccgtcaaacctctc
acagccgaagccgccatgcccatcaaaggcatcggccccgccaccgcggaaaaatacctc
ccccactttctcgaactcatcgccgaatatttggaaggataa
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