Akkermansia glycaniphila: PYTT_1275
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Entry
PYTT_1275 CDS
T04551
Name
(GenBank) dead/deah box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYTT_1275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agl03019
]
PYTT_1275
03400 DNA repair and recombination proteins [BR:
agl03400
]
PYTT_1275
Enzymes [BR:
agl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYTT_1275
Messenger RNA biogenesis [BR:
agl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYTT_1275
DNA repair and recombination proteins [BR:
agl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PYTT_1275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
HTH_Cmi2_C
TrmB
Motif
Other DBs
NCBI-ProteinID:
SEH86088
UniProt:
A0A1C7PCB7
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All DBs
Position
I:1510990..1512897
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AA seq
635 aa
AA seq
DB search
MSMTTLLSPEDESRVLSLFGKPSFRPVQRELIACALRGESCLGVLPTGHGKSLCYQAAAV
LFGGTSVVVSPLIALMRDQEDSLHALGIAARRWESGLSPAERAETLEALRAGELAILFVA
PESLDNAELADALRDVPKGLFVVDEAHCVSEWGHSFRPDYLKLPAWAEPHGFHAVMALTA
TATLRVQEDLCRAFGIAAGHVFALSPYRPGIDRRVCSVSEEGRDGLLEGFLREPEHLPAI
VYCRTRKSTEEVADRLGKAGFSARAYHAGQPTDVRARIQDDFLSGSCDVLVATIAFGMGI
DKQDVRTVVHYHLPANPESYIQESGRAGRDGGPSWSLVLLSPGDLVTARNRIRGEVPDDE
GLMRCVRWLLPAARRVVSLWELGTECDLPEEVIQRILQRMQDEGIVEVAARGAKYYKARP
LFPIGTILDGRSEEERKVLLWLDGHREGEVEDLAFEFDMDWTEARACLDEMEQSGEWKIA
FRQSALQVRTLDPAASPRDVADLLADYYAGRCRAAQERLDTVLGMFTGHDCLNRALGAYF
GFPGEEPCGHCFLCRGERIACPEDMESAFPDDLREQLDELADRGLSALSRPSQWVRFLLG
ISSPASLRARLWAHPLYGACSGCGWEDVARFCGRS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgacgaccctgctttcgccggaggatgagagccgtgtgctttcccttttcggc
aagccttcgttccgccccgtgcagcgggagctgattgcctgcgccctgcggggcgagtcg
tgcctcggcgtgttgccgacgggccacggcaagagcctgtgctatcaggcggccgccgtg
ctgttcggcggtacgagcgtcgtcgtttcgccgttgatcgccctgatgcgggatcaggag
gattccctccatgcgttgggcatcgccgcccgccgctgggaatccggcctttctcccgcc
gagcgggcggagacgctggaggcgctgcgtgccggggagctggcgattctgttcgtggct
cccgagtcgctcgacaatgcggagctggcggatgccctgcgggatgtgccgaaggggctg
ttcgtcgtggacgaggctcattgcgtttccgagtgggggcacagcttccggcccgattat
ttgaagctcccggcgtgggccgagccgcacggtttccatgccgtgatggctctgactgcc
acggcgaccctccgcgtgcaggaagacctgtgccgggcgttcggcattgccgccgggcat
gtgttcgccctgtcgccgtaccgccccggtatcgaccgccgcgtttgcagcgtttccgaa
gagggcagggacgggctgctggaaggcttcctgcgcgagccggagcatctgcccgccatc
gtgtactgccgcacgcgcaaaagcaccgaggaggtggcggacaggctcgggaaagcgggt
ttctccgcgcgagcctaccatgcgggccagccgacggatgtgcgggcgaggattcaggac
gatttcctttccgggagctgcgatgtgctcgtcgctaccatcgccttcggcatggggatc
gacaagcaggatgtccgcaccgtcgtccactaccatcttcccgccaatccggaatcctac
attcaggagtcgggccgtgcggggcgcgacggcgggccgtcgtggagcctcgttctcctg
tctcccggcgatctcgtgacggcgcgcaaccgcatacgcggcgaggtgccggacgatgag
gggctgatgcgctgcgtccgctggctgttgcccgccgcccgccgcgtcgtttccctgtgg
gagctcggcaccgagtgcgatcttcccgaagaggtgattcagcgcattctgcagcgcatg
caggatgagggaatcgtggaggtagccgcacgcggggcgaagtattacaaggcccggccc
ctgttcccgatcggcaccattctcgacggccgcagcgaggaagagcgcaaggtgctgctc
tggctggacggccatcgcgagggcgaggtggaggatctggcgttcgagttcgatatggac
tggacggaggctcgcgcctgcctcgacgagatggagcagtccggcgagtggaagattgca
ttcaggcagagcgcgctgcaggtcaggactctcgatcccgcggcctctccccgcgatgtg
gcggatctgctggcggattattatgcgggccgctgccgcgcggcgcaggagaggctggat
accgtactcggcatgttcaccgggcatgattgcctgaaccgtgcgctcggtgcgtatttc
ggttttcccggcgaggagccgtgcggccattgtttcctgtgcaggggcgagcgcatcgcc
tgccctgaagatatggaatcggcgttcccggacgatttgagggagcagctcgacgagctg
gcggacagggggctttccgctctgagccgcccttcgcagtgggtgcgctttctgctgggc
atttcctcgcctgcttccctgcgcgcccgtttgtgggcgcacccgctgtatggagcctgt
tccggctgcggctgggaggatgtggcgcggttctgcggccggagctga
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