Akkermansia glycaniphila: PYTT_1732
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Entry
PYTT_1732 CDS
T04551
Name
(GenBank) dead/deah box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYTT_1732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agl03019
]
PYTT_1732
03009 Ribosome biogenesis [BR:
agl03009
]
PYTT_1732
Enzymes [BR:
agl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PYTT_1732
Messenger RNA biogenesis [BR:
agl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYTT_1732
Ribosome biogenesis [BR:
agl03009
]
Prokaryotic type
rRNA helicases
PYTT_1732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SEH92084
UniProt:
A0A1H6M3X6
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All DBs
Position
I:complement(2037378..2039192)
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AA seq
604 aa
AA seq
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MTSTTTFSELGICPEILEAIEVLGFETPSAIQAQAIPAALSGSDILGLSHTGSGKTLAFS
IPALEAIDPGVRAVQVLCLCPTRELAVQICREVDKLALFLDGVSAVPIYGGASFRPQLDA
LQRGVQFVVGTPGRVMDLMEQGALRLDELRMLILDEADQMLDMGFLEDIERIASSLPEQK
QTLFFSATMSPAIRHLLSRFTESPVEVNIERPTLTVPTIEQLVYEVVFSSRIEVLSRLME
MGKVKMGLVFANTKRVVDDIVDGLMARGYAVDRLHGDMPQNLRERVMDSFRRGNLRILVA
TDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAISFIGRRDFSLLGRIE
RFIGTKMNRETVMTAEQVDQMRKEALVDDILERVKTGSGLPDEMREVELPAEELVAAMFS
LLVSRTSREIQPIPEDKPSRYSRPRQADTDEQPAGEERYEKGHSWAGMEDTVTLFMNGGK
MLGIRPKDIAGLLYNEGGAPKGTVGDIRMFPKHCLIEVDPSVAEQLKERLSTTMICGYEV
NVREDKGKPAGDAESFQRPRSGYRKGNSYRDGGGYGNRRDRNDRAPRTRRDRGDGGGYSR
RYGN
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccaccaccacgttttccgaactcggcatctgccccgaaatcctcgaagccatc
gaggtcctgggctttgaaactccctccgccatccaggcgcaggccatcccggcagccctc
tccggctccgatatcctcggcctttcccacaccggctccggcaaaacgctcgccttctcc
atccccgcgctcgaggccatcgaccccggcgttcgagccgtgcaggtactctgcctctgc
cccacccgcgaactcgccgtacagatctgccgcgaagtggacaaactcgccctcttcctc
gacggcgtctcagccgtacccatctacggcggcgcctccttccgcccgcagcttgatgcc
ctccagcgcggcgtccagttcgtcgtcggcacccccggccgcgtcatggacctcatggaa
cagggagcactccgcctcgacgaactccgcatgctcatcctcgacgaagccgaccagatg
ctcgacatgggcttcctcgaagacatcgaacgcatcgcctcctccctgcccgagcagaag
cagaccctcttcttctcggccaccatgtccccggccatccgccacctcctttcccgcttc
accgaatctcccgtcgaagtcaacatcgaacggcccactctcaccgtacccaccatcgaa
cagctcgtttacgaagttgtcttctcctcccgcatcgaagtcctcagccgcctcatggaa
atgggcaaggtcaaaatgggcctcgtcttcgccaacaccaaacgagtcgtcgacgacatc
gtggacggcctcatggcccgcggctacgccgtcgaccgcctccatggcgacatgccccag
aacctccgcgaacgcgtcatggactccttccgccgcggcaacctccgcatcctcgtcgcc
accgacatcgccgcccgcggcctcgatgtggacgatgtggacgccgttgtcaacttcgaa
ctcccccgcgaccccgaagactacgtccaccgcatcggccgcaccgcccgcgcagggcgc
aaaggcaaggccatctccttcatcggcaggcgcgacttctccctgctcggccgcatcgaa
cgcttcatcggcacaaaaatgaaccgggaaaccgtcatgaccgccgagcaggtcgatcaa
atgcgcaaggaagccctcgtggatgacatcctcgaacgcgtcaaaacaggcagcggcctg
ccggacgaaatgcgcgaagtcgaacttcccgccgaagaactcgtcgcggccatgttcagc
ctcctcgtctcccgcacctcgcgggaaatccagcccatccccgaagacaagccctcccgc
tactcccgcccccgccaggccgataccgatgaacagccggccggagaagaacgctacgaa
aaaggccactcatgggcaggcatggaagacaccgtcaccctcttcatgaacggcggcaaa
atgctcggcatccgccccaaggacatcgccggactcctctacaacgaaggcggcgcaccc
aaaggcaccgtcggcgacatccgcatgttcccgaaacactgcctcatcgaagtcgacccc
tccgtcgccgaacagctcaaggaacgactctccaccaccatgatctgcggctacgaagtc
aacgtccgcgaagacaaaggcaaacccgccggagacgccgaatccttccagcgcccccgc
agcggctaccgcaagggcaacagctaccgcgacggcggaggctacggtaaccgacgcgac
cgtaacgaccgcgcaccccgcacgcgtcgcgaccgcggagacggcggcggatacagccgc
cgctacggcaactga
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