Actinacidiphila glaucinigra: OIE69_13035
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Entry
OIE69_13035 CDS
T09685
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIE69_13035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agla03019
]
OIE69_13035
Messenger RNA biogenesis [BR:
agla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OIE69_13035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7697
PLDc_2
Motif
Other DBs
NCBI-ProteinID:
WSD59785
LinkDB
All DBs
Position
complement(2997852..2999537)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPALPEGGLRITPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTSIRDRLDDVVGIVLTHGHEDHIGAVPFLLREKDDIPLIGSKLTLALIEAKLA
EHRIRPYTLEVAEGQRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFIPHERDISPVLRQVFAKADKRIIVAS
FASHVHRIQQVLDAAHERGRKVALVGRSMVRNMGIARDLGYLRVPPGLIVDVKTLDDLPD
EKIVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVVLASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGRATGIPKE
RCVLAEDGLVVDLVDGVAKVTGKVQAGYVYVDGLSVGDVTESSLKDRRILGEEGIVSVFI
VVDSTTGKVVGGPFIQARGSGIDDEAFNEVLPKIEESLARAASDGVAEVRQLQQLIRRAI
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccatccgcaccctgagctcggcccaccccccgcgctgcccgaaggcggtctgcgc
atcaccccgctaggcggtctcggagagatcggccgcaacatgacggtcttcgagtacgga
ggccgactgctgatcgtcgactgcggggtgctcttcccggaggaggagcagcccggagtc
gacctgatcctcccggacttcacctcgatccgcgaccgcctggacgacgtcgtcggcatc
gtcctcacgcacggccacgaggaccacatcggcgccgtccccttcctcctgcgggagaag
gacgacatcccgctgatcggctcgaagctgaccctcgccctcatcgaggccaagctcgcc
gagcaccgcatccgcccctacacgctcgaggtcgccgaggggcagcgcgagcgcatcggg
cccttcgactgcgagttcatcgcggtcaaccactccattcccgacgccctcgcggtcgcc
atccgcaccccggccggcatggtcgtgcacaccggcgacttcaagatggaccagctgccg
ctcgacggccggctcaccgacctgcacgccttcgcgcggctgtcggaggagggcatcgac
ctgctgctctcggactccaccaacgcggaggtccccggtttcatcccgcacgagcgggac
atctcgccggtgctccgccaggtcttcgccaaggccgacaagcggatcatcgtggccagc
ttcgccagccacgtccaccgcatccagcaagtcctggacgccgcccacgagcggggccgc
aaggtcgccctcgtcggccgttccatggtccgcaacatgggcatcgcccgtgacctgggc
tacctgcgggtcccaccgggcctcatcgtggacgtcaagacgctcgacgacctccccgac
gagaagatcgtcctggtgtgcaccggctcccagggcgaacccatggcggcgctgtcccgg
atggccaaccgtgaccaccagatccgcatcgtcgagggcgacaccgtcgtcctcgcctcg
tcgctcatcccgggcaacgagaacgcggtctaccgggtgatcaacggcctcacccgctgg
ggtgccaacgtcgtgcacaagggcaacgccaaggtgcacgtctccggccacgcctccgcc
ggcgagctgctgtacttctacaacatctgcaagccccgcaacctcatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgaactcggccgggccaccggtatcccgaaggag
cgctgcgtcctcgccgaggacggcctggtcgtagacctcgtcgacggcgtcgccaaggtc
accggcaaggtgcaggcgggctatgtgtacgtcgacggcctctcggtcggcgacgtcacc
gagtcctccctcaaggaccgccgcatcctcggcgaggagggcatcgtctcggtgttcatc
gtcgtcgacagcaccaccggcaaggtcgtgggtggcccgttcatccaggcccgtggctcc
ggcatcgacgacgaggccttcaacgaggtcctccccaagatcgaggagtccctcgcccgc
gccgcctccgacggcgtcgccgaggtccgtcagttgcagcagctcatccgccgcgcgatc
ggcaagtgggtctccgacaactaccgccggcgcccgatgatcctccccgtggtcgtggag
gtctga
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