Actinacidiphila glaucinigra: OIE69_17765
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Entry
OIE69_17765 CDS
T09685
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIE69_17765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agla03021
]
OIE69_17765
03400 DNA repair and recombination proteins [BR:
agla03400
]
OIE69_17765
Enzymes [BR:
agla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIE69_17765
Transcription machinery [BR:
agla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIE69_17765
DNA repair and recombination proteins [BR:
agla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIE69_17765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
WSD60644
LinkDB
All DBs
Position
complement(4023119..4027018)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRTRDLSSLEAQVSVERQQIEQRRDSDIESRQKKLEAD
LGELEAEGAKSDVRRKVREGAEREMKQLRDRAQRELDRLDEVWSRFKNLKVQDLEGDELL
YRELRERFGTYFQGSMGAAALQKRLESFDLDEEAAKLREIIRTGKGQKKTRALKRLKVVS
AFLQTTNKPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDAEERELRGE
GRAFGSTAEAIMAFDARELSLQSRIDIRFPIGTVPPRGWTPPADVEGEEPWQLGDSFRLN
TTLGRALFNELLPEDYPFVDYPVGKKQLSEIVNDLAERYPKVIVAATLDNLKASGFHWAT
RSGVTVAVSDIVVPEAKKAIIAGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLAIAERS
EDGSLRKTDDVETSVYARCLAEDVVVDGKVLATAGTDLGDVLIEQLIRNGVEEVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRIRIEETEKTKKIVITPDDGAEEIAYPISKRARL
LVGEGDHVEVGERLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERGRFETENRRVVAEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAIHAKSDSLLGLKENVIIGKLIPAGTGLARYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgcgaccgcggacgacatc
cgacagtggtcccatggcgaggtcaagaagcctgagaccatcaactaccgcaccctgaag
cccgagaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgttgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgctccc
gtgacccacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gacgagcgtcgtacccgcgacctgtcctcgctggaggcccaggtctccgtcgagcgtcag
cagatcgagcagcgccgtgactcggacatcgagtcccggcagaagaagctcgaggccgac
ctcggcgagctggaggccgagggcgccaagtccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgtgcccagcgcgagctcgaccggctcgac
gaggtgtggtcccgcttcaagaacctcaaggtccaggacctggagggtgacgagctgctc
taccgcgagctgcgggagcgtttcggcacctacttccagggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggctgccaagctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagaccaccaacaagccgcagggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgcctcctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgcttcaggaggccgtcgacgcg
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtgacgatgccgacgcaggac
atggtcctgggtctgttcttcctcaccacggacgcggaggagcgcgagctccggggcgag
ggccgggcgttcggctcgaccgccgaggcgatcatggccttcgacgcgcgcgagctctcg
ctgcagtcgaggatcgacatccgcttcccgatcgggaccgtcccgccgcgtggctggacc
ccgccggcggacgtcgagggcgaggagccctggcagctcggtgactccttccggctgaac
acgaccctgggccgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtggac
tacccggtgggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcgtccggcttccactgggcgacc
cgttccggcgtcaccgtggccgtctccgacatcgtcgtgcccgaggccaagaaggccatc
atcgcgggctacgaggcacaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagaccaacccgatcttcatgatggtcgactcg
ggtgcccgtggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcc
aacgcgaagaacgagaccatcccgcggccgatcaaggcgtcgttccgcgagggtctcacc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctcgcggacaccgctctg
cgtaccgccgactccggttacctgacgcgtcgtctggtcgacgtctctcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggtctcaagctggcgatcgccgagcgctcc
gaggacggttcgctgcgcaagacggacgacgtcgagaccagcgtgtacgcgcgctgcctc
gcggaggacgtcgtggtggacggcaaggtgctggccaccgccggcaccgacctgggcgac
gtgctcatcgagcagctcatccgcaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgcgagtccgcggtgggcacctgcgcgatgtgctacggccgttcgctcgcgaccggc
aagctggtggacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcgcgtacccccaagggtgtcgccccg
atctcggaggcggcgggccgcatccggatcgaggagacggagaagaccaagaagatcgtc
atcaccccggacgacggtgccgaggagatcgcctacccgatctccaagcgtgcccgtctg
ctggtgggcgagggcgaccacgtcgaggtcggcgagaggctgaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggtcagcgggccgtccaggtccacctggtcggggaa
gtgcagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgggtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtcgagcgcggccgcttcgagaccgagaaccgtcgggtcgtggcggagggt
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggccacc
gagtcctggctgtcggccgcctccttccaggagacgacccgagtcctgaccgacgcggcg
atccacgccaagtccgactcgctgctgggcctcaaggagaacgtcatcatcggcaagctc
atcccggcgggtacgggtctggcccgttaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactacagcccgttcggc
accggctccggccaggccgtcccgctggaggactacgactacggcccgtacaacggctga
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