Actinacidiphila glaucinigra: OIE69_18435
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Entry
OIE69_18435 CDS
T09685
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agla
Actinacidiphila glaucinigra
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agla03016
]
OIE69_18435
Enzymes [BR:
agla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OIE69_18435
Transfer RNA biogenesis [BR:
agla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OIE69_18435
Prokaryotic type
tRNA splicing ligases
OIE69_18435
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WSD60761
LinkDB
All DBs
Position
complement(4156536..4157729)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYTEVPGVRVPIRMWTDPAAVEGGAMQQLRNVSSLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVRTSLTADDLPGDLSRLRSKIEQAVPVGRGMHDEAVDPA
RLYGLSAAGWDRFWDGFDDLAEPVRFRRERATRQMGSLGSGNHFIEVCLDEEGAVWLMLH
SGSRNIGKELAEYHIGEAQKLSHNQGLIDRDLAVFIADTPQMAAYRRDLFWAQDYAKRNR
AIMMALFQEVLRREFRKAKVTFDEVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDHGI
IPGSMGTGSYIVRGLGNTDAFNSASHGAGRKMSRTAAKKRFSTRDLEEQTKGVECRKDSG
VVDEIPGAYKPIEKVIEQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacacagaagtgcccggagtgcgggtgcccatccgcatgtggaccgacccggcc
gcggttgagggcggggccatgcagcagctgcgcaacgtctcctcgctgccgtggatcaag
ggcctcgccgtcatgcccgacgtccactacggcaagggcgccacggtgggttcggtgatc
gcgatgcacggcgcggtctgcccggccgcggtcggcgtggacatcggctgcggcatgagc
gccgtgcggacctcgctgacggccgacgacctgcccggcgacctctcccggctccgctcc
aagatcgagcaggccgtcccggtcggccgcggcatgcacgacgaggccgtcgaccccgcc
cggctgtacggcctgtccgccgccggctgggaccgcttctgggacggcttcgacgacctg
gccgagcccgtccggttccgtcgggagcgcgcgacgaggcagatgggcagcctcggttcc
ggcaaccatttcatcgaggtctgcctcgacgaggagggcgcggtctggctgatgctgcac
tccggctcgcgcaacatcggcaaggaactcgcggagtaccacatcggcgaggcccagaag
ctgtcccacaaccagggcctgatcgaccgcgacctggccgtcttcatcgcggacaccccg
cagatggcggcctaccggcgcgacctgttctgggcgcaggactacgcgaagcgcaaccgc
gcgatcatgatggccctgttccaggaggtgctgcggcgcgagttccgcaaggccaaggtc
accttcgacgaggtcatctcctgccaccacaactacgtggcggaggagcgctacgacggc
atggacctgctcgtcacccgcaagggcgcgatcagggccggcagcggcgaccacggcatc
atcccgggctccatgggcacgggttcgtacatcgtccgcggcctcggcaacaccgacgcc
ttcaactccgcctcgcacggcgcgggccgcaagatgagccgcacagcggcgaagaagcgg
ttctccacgcgggacctggaggagcagaccaagggcgtcgagtgccgcaaggactcggga
gtggtggacgagatccccggcgcgtacaagccgatcgagaaggtgatcgagcagcagcgg
gacctcgtggaggtcgtcgcgaagctcaagcaggtcgtctgcgtgaagggttga
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