Actinacidiphila glaucinigra: OIE69_23915
Help
Entry
OIE69_23915 CDS
T09685
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OIE69_23915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agla03400
]
OIE69_23915 (mfd)
Enzymes [BR:
agla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OIE69_23915 (mfd)
DNA repair and recombination proteins [BR:
agla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OIE69_23915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
AtTam9
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WSD61731
LinkDB
All DBs
Position
5309627..5313166
Genome browser
AA seq
1179 aa
AA seq
DB search
MSLNGLLDVVVDDPALAEAVRGAADGNRPHVDLVGPPAARPLALAALAARAGRTLLAVTA
TGREAEDLVAALRSLLPEDSVVEYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
TAGPVRVVVAPIRSVLQPQVKGLGDLVPVALRTGRTADLNEVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEEVRARAAELAEEHPQLRELLDKIAQGIAVEGMESLAPVLVDDMELLLDVLPAGSLTV
VCDPERVRTRAADLVATSREFLEASWAATAGGGEAPIDLGAASLWSIADVRDRARELGVP
WWSVSPFAADDELDDDTLKLGMHAPEVYRGDTARALADTKGWLAEGWRAVFVTEGHGPAA
RIVEVLGNEGIAARLDTGLEGPVEPSVVHVACGSLESGFIDPALRIAVLTETDLSGQKSS
TKDMGRMPSRRRKTIDPLTLQAGDFIVHEQHGVGRYVEMVQRTVQGATREYLVVEYAPAK
KGQPGDRLFVPTDQLEQITKYVGGEAPSLHRLGGADWTKTKARAKKAVKEIAADLIRLYS
ARMAAPGHTFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVVKALSRFQTDAEAK
AVLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIAAAVRRELLREGQAF
YIHNRVESIDRAAARLRDLVPEARIATAHGQMGESALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDTFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRTALEEG
GGEAEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAVNSEEDIKAVREELTDRYG
KLPEPVENLLLVAGLRLLARRLGVSDITLQGNNVRFSPVELRESQELRLNRLYPRTVVKQ
AARQILVPRPATARIGGKPVVGRELLAWTAELLTAVLDG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaacggtctgctcgacgtcgtcgtggacgatcccgcgctcgcggaggcggtc
cgcggcgccgcggacggcaaccgcccgcacgtcgacctggtgggtccgcccgccgcccgc
ccgctggccctggccgcgctcgcggcccgcgccggccgcaccctgctggcggtgacggcg
accggccgcgaggccgaggacctggtcgcggccctgcggtcgctgctgcccgaggactcc
gtcgtggagtacccggcctgggagacgctgccgcacgagcggctgtcgccccgctcggac
acggtgggccgccggctggccgtgctgcgccggctggcgcaccccagcgcggacgacccg
accgccggcccggtgcgcgtcgtggtcgcgccgatccgctccgtgctgcagccgcaggtc
aagggcctgggcgatctggtcccggtggcgctgcggaccgggcggaccgccgatctgaac
gaggtcgtggacgccctggccgccgccgcgtacgcccgggtggagctggtggagaagcgc
ggtgagttcgccgtgcgcggggggatcctggacgtcttcccgcccaccgaggagcacccg
ctccgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtggccgac
cagcgctcgctggaggtcgccgagcacggcctgtgggcgccgccctgccgggagctgctg
ctcaccgaggaggtgcgggcccgcgccgccgagctggcggaggagcacccgcagctgcgc
gaactgctggacaagatcgcccagggcatcgccgtggagggcatggagtccctcgccccg
gtgctggtcgacgacatggagctgctgctggacgtgctgccggccgggtcgctgaccgtg
gtctgcgacccggagcgggtccgtacccgggccgccgacctcgtggcgaccagccgggag
ttcctggaggcctcctgggcggccaccgccgggggcggcgaggcgccgatcgacctgggc
gcggcctcgctgtggagcatcgcggacgtgcgcgaccgagcccgtgagctgggcgtcccc
tggtggtcggtgagcccgttcgcggccgatgacgagctggacgacgacaccctcaagctc
ggcatgcacgctcccgaggtctaccggggcgacactgcccgggcgctggccgacaccaag
ggctggctcgccgagggctggcgcgcggtcttcgtcaccgagggccacggccccgccgcc
cgcatcgtggaggtgctgggcaacgagggcatcgcggcccgcctggacacgggtctcgag
ggcccggtcgagccctccgtggtccatgtggcctgcggctcgctggagagcggcttcatc
gacccggccctgaggatcgcggtcctcaccgagacggacctgtccggccagaagtcctcc
accaaggacatgggccgcatgccgtcccggcgccgcaagaccatcgacccgttgacgctg
caggcgggcgacttcatcgtgcacgagcagcacggcgtcggccgctacgtggagatggtg
cagcgcaccgtccagggcgccacccgcgagtacctggtggtcgagtacgccccggcgaag
aagggccagccgggcgaccggctcttcgtgcccaccgaccagctggagcagatcaccaag
tacgtcggcggtgaggcgccctcgctgcaccggctcggcggcgcggactggacgaagacc
aaggcgcgtgccaagaaggcggtcaaggagatcgccgccgacctgatccggctgtactcc
gcccgcatggcggcgcccggccacaccttcgcaccggacaccccctggcagcgggagctg
gaggacgcgttcccgtacgcggagaccccggaccagctcaccacgatcgccgaggtcaag
gaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgggcggccttcaaggccgtgcaggacggcaagcaggtggcc
gtcctggtgcccaccaccctgctggtgcagcagcacttcggcaccttctccgagcgctac
tcgcagttcccggtcgtggtgaaggcgctctcccgtttccagaccgacgccgaggccaag
gccgtcctggagggcctgcgggaggggtcggtggacgtcgtcatcggcacccaccgcctg
ttctcgtcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtggagcacaaggagcagctgaagaagctccgagccaacgtcgacgtgctgacg
atgtccgccacgccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tcgacgatcaccaccccgccggaggagcggcacccggtgctgaccttcgtcggcccgtac
gaggagaagcagatcgccgccgcggtccgccgcgaactgctgcgcgagggccaggccttc
tacatccacaaccgggtggagagcatcgacagggccgccgcgcggctgcgcgacctggtg
cccgaggcgcggatcgccaccgcgcacgggcagatgggcgagtccgcgctggagcaggtc
gtggtggacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacacgctcatcgtcgagcgcggcgacaccttcggcctc
tcccagctgcaccagttgcgcggccgggtcggccgcagccgcgagcgcggttacgcgtac
ttcctgtacccgccggagaagcccctcaccgagaccgcgcacgagcggctggcgaccatc
gcccagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggtcacatcgcgggcgtcggcttcgac
ctgtacatccgcatggtcggcgaagccgtcgccgactaccggaccgcgctggaggagggc
ggcggcgaggccgaggaggccccgctggaggtcaagatcgagctgccggtcgacgcgcac
gtcccgcacgactacgcgccgggcgagcggctgcggctgcaggcctaccggtcgatcgcc
gcggtgaactccgaggaggacatcaaggccgtccgcgaggagctcaccgaccggtacggc
aagctcccggagccggtggagaacctgctgctggtcgccgggctgcggctgctggcccgc
cgtctcggggtcagcgacatcaccctgcagggcaacaacgtccgcttctcgccggtggag
ctgcgggagtcgcaggagctgcggctcaaccgcctctacccccgcacggtggtgaagcag
gcggccaggcagatcctcgtgccgcgtcccgccacggcgcggatcggcggcaagccggtg
gtcggccgggaactgctggcgtggacggccgagttgctgaccgcggtcctggacggctga
DBGET
integrated database retrieval system
