Actinacidiphila glaucinigra: OIE69_26110
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Entry
OIE69_26110 CDS
T09685
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIE69_26110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agla03019
]
OIE69_26110
03009 Ribosome biogenesis [BR:
agla03009
]
OIE69_26110
Enzymes [BR:
agla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OIE69_26110
Messenger RNA biogenesis [BR:
agla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OIE69_26110
Ribosome biogenesis [BR:
agla03009
]
Prokaryotic type
rRNA processing factors
OIE69_26110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WSD62114
LinkDB
All DBs
Position
5820674..5824789
Genome browser
AA seq
1371 aa
AA seq
DB search
MLEQNEPNQAPENGATEAASGGTDTEATAAPRRRRRAASRPAGPPAAGEAAQDVTSATAA
AAAEPPAIPAETPSAETEAAPARTRRRATRKAAAPEQPPAGSAQETAEAAPAPARRRATR
KSAAPATAPEAPAAQTPATETPATETPVAEQAEQPAAPARGRRRATRKVTSPEPAPAAEE
TSGPAATADTQAKELQADLPLHAEAAPVAEQAEQPAAPARGRRRATRKVTSPEPAPAEDA
AVAVAAADAPAKALQEEPTERPKRGRAEKPQAEKSRATRSRRRTAPAASFLAADDGSRRL
KPGALAPREEARAEAGGEAAATAAPEQRTYTAKAVPDGSGWAVEVEDAYEIRGYGDTVDE
ARLAAVAAVAEAFGVPADTIVIEVQEAQGAEVEPEVVPEPEPEVAPEPEAAPARGRRRVV
RPPVAVFQAPVFQAPTAAQAVQPAEHEEPEEPEAEEYAGGRRRRRRRRGEPAEAVEAVEA
AQTAVTEQADEEPEAAHEDEAEAEEHEADEHEDEGGERISRRRRRGGRRRRRGEAADGDE
TAGEDEEAEDEGASDEGEDDEEQDAENSSTSRRRRRRRRRGGDGPAEESLGEDAPERTVV
KIREPRKPSEPVDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVDRV
MVVRENGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGR
NAVLYAGEVNFEALGMGNGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYL
VYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQS
QWEDIQKKAKSGNAPSLLYGEPDMTVRVVRDIFNEDFGKVIVSGDTAWETIHGYVSHVAP
DLAERLGRWTSEVDVFATYRIDEQLLKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFT
GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGR
DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQAAATGGGGKRK
RRRGGAAEEHAVAETAAVTEAEEAAEEAPELEPVAVTEAELVPAVGGDEEWYSSPAEAEA
AVGRRSRRRASRRVTAPVSSPDATAEIVTVVPAVAPVTEPQAAEAATATAVETPVAVGAA
EPAEEPVAPVRGRRRATRKATAPSAPAGEAATVVVSAAETAVPAPAPEPEPVAEVQEPAA
PVRRRATRRASAPAGAPSSGEEAAVVVVPGTEAQPEQTPAAEAGTVETETAETEPKKRAA
RKTAAKKAPAKKAVAKKTAAKKTAVKKTAAKKTTAKKAAAKATAEAPTEAS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcagaacgagccgaaccaggcgcccgagaacggcgccaccgaagccgcctcc
ggcggcaccgacaccgaggcgacggccgctccgcgccgccgtcgccgggcggcgagccgt
ccggcgggtccgcccgcggccggcgaggccgcccaggacgtgacctccgctacagcggca
gcggccgccgagccgccggccataccggccgagaccccctccgccgaaaccgaggcagcc
cccgcgcggacccgccgccgggcgacccgcaaggcggccgccccggagcagccgcccgcc
ggatccgcgcaggagacggccgaggccgcccccgccccggcccgccgtcgcgcgacgcgg
aagtccgcggccccggcgaccgcccccgaggcccccgccgcgcagacgcctgccaccgag
acccctgccaccgagacccccgtggcggagcaggccgagcagccggccgccccggcccgt
ggccggcgccgtgccacgcgcaaggtgaccagccccgagcccgccccggccgccgaggag
acgagtggccccgcggccaccgccgacacgcaggccaaggagctccaggccgatctgccg
ctgcacgccgaggccgcccccgtggcggagcaggccgagcagccggccgccccggcccgt
ggccggcgccgtgccacgcgcaaggtgaccagccccgagccggccccggccgaggacgcg
gcggtggccgtggccgccgccgacgctccggcgaaggccctccaggaggagcccaccgag
cgtccgaagcgcgggagggccgagaagccccaggccgagaagtccagggccacccgttcg
cgtcggcgcaccgctccggccgcctccttcctcgccgccgacgacggctcgcgccgtctg
aagccgggcgcgctcgcgccgcgtgaggaggcgcgggccgaggccggcggcgaggccgcc
gcgaccgccgccccggagcagcgcacctacaccgccaaggccgtcccggacggttccggc
tgggccgtcgaggtcgaggacgcctacgagatccgcggctacggcgacaccgtcgacgag
gcccgcctcgccgcggtcgcggccgtcgctgaggcgttcggcgtccccgccgacacgatt
gtcatcgaggtgcaggaagcgcagggcgccgaggtcgagcccgaggtcgtgcccgagccc
gagcccgaggtcgcgcccgagcccgaggctgctcccgcgcgtggccggcgccgggtcgtg
cgcccgcccgtggccgtgttccaggcgccggtgttccaggcccccaccgccgcgcaggcc
gtgcagcccgcggagcacgaggagccggaggagcccgaggccgaggagtacgccggcgga
cgccgccgtcgccgccgtcgccgtggcgagcccgcggaggccgtggaggccgtggaggcc
gcgcagaccgccgtcacggagcaggccgacgaggagcccgaggccgcccacgaggacgag
gcggaggccgaggagcacgaggccgacgagcacgaggacgagggcggcgagcggatctcc
cgccggcgccgtcgcggtggccgtcgtcgtcgtcgcggtgaggccgccgacggcgacgag
accgccggtgaggacgaggaggccgaggacgagggcgcctcggacgagggcgaggacgac
gaggagcaggacgccgagaacagcagcaccagccgccgccgtcgccgtcggcgccgccgc
ggcggtgacggtccggccgaggagagcctgggcgaggacgcgccggagcgcacggtcgtc
aagatccgtgagccgcgcaagccgtccgagccggtcgacgaggtgcagtccatcaagggc
tccactcgtctggaggccaagaagcagcgccgccgcgagggccgcgagcagggccgccgc
cgggtgccgatcatcaccgaggccgagttcctggcccgccgcgaagcggtcgaccgtgtg
atggtcgtccgtgagaacggcgaccggacgcagatcggcgtgctggaggacggcgtcctc
gtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtctacctgggc
aaggtccagaacgtgctgccgtccatggaggccgcgttcgtcgacatcggcaagggccgc
aacgccgtcctgtacgccggtgaggtcaacttcgaggcgctgggcatgggcaacggcccg
cggcgcatcgaggcggccctcaagtccggccagtcggtgctggtccaggtcaccaaggac
ccgatcggccacaagggcgcgcgtctgaccagccaggtctcgctgcccggccgctacctg
gtctacgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgc
gcccggctgaagcagatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgagcggctgcagtcg
cagtgggaggacatccagaagaaggccaagagcggcaacgccccgtcgctgctctacggc
gagccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttcggcaaggtc
atcgtcagcggcgacaccgcctgggagaccatccacggctacgtctcgcacgtcgcgccg
gacctggcggagcggcttggccgctggacctccgaggtcgacgtcttcgccacgtaccgg
atcgacgagcagctgctgaaggcgctggaccgcaaggtctggctgccgagcggcggttcg
ctggtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcacc
ggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcggccgaggag
atcgtgcgccagctgcggctgcgcgacctgggcggcatcatcgtgatcgacttcatcgac
atggtgctggagtccaaccgcgacctcgtcatgcgccggctgctggaatgcctgggccgg
gaccgcaccaagcaccaggtggccgaggtcacctcgctgggcctggtgcagatgacccgc
aagcgggtgggccagggcctgctggagtccttctccgagacctgcgtgcactgcaacggc
cgcggcgtcatcgtccacatggaccaggccgcggcgaccggtggcggcggcaagcgcaag
cgccgtcgcggcggtgcggcggaggagcacgcggtcgcggagaccgccgccgtcaccgag
gccgaggaggccgcggaggaggctcccgagctggagccggtcgcggtcaccgaggcagag
ctggtgcccgcggtcggcggggacgaggagtggtacagcagcccggcggaggccgaggcg
gcggtcggccggcgttcccggcggcgggcctcgcgacgggtcaccgctccggtgagctcg
ccggacgccacggccgagatcgtcaccgtcgtcccggcggtcgcgccggtcaccgagccc
caggcggcggaggccgcgacggccaccgccgtcgagacgcccgtcgccgtgggcgcggcc
gagccggcggaggagcccgtggcaccggtccgcggccggcgccgggctacccgcaaggcc
accgcgccgagcgcgcccgccggtgaggccgccaccgtggtggtctccgcggcggagacg
gccgtcccggcaccggcccccgagccggagcccgtggcggaggtccaggagccggcggcg
ccggtccgccggcgtgccacgcgtcgggcgtccgcccccgcgggcgcgccgtcctccggc
gaggaggccgcggtcgtggtcgtccccggtaccgaggcgcagccggagcagaccccggcg
gccgaggcggggacggtggagaccgagaccgccgagacggagccgaagaagcgggccgcg
cgcaagacggccgcgaagaaggcgccggcgaagaaggccgtcgcgaagaagacggccgcc
aagaagaccgctgtcaagaagaccgcggccaagaagacgacggcgaagaaggccgccgcc
aaggccacggccgaggcgcccaccgaggcgtcctga
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