Actinacidiphila glaucinigra: OIE69_28025
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Entry
OIE69_28025 CDS
T09685
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OIE69_28025 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agla03400
]
OIE69_28025 (ligD)
Enzymes [BR:
agla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OIE69_28025 (ligD)
DNA repair and recombination proteins [BR:
agla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OIE69_28025 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WSD62461
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All DBs
Position
6230498..6231397
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AA seq
299 aa
AA seq
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MPAPSASPDRQTVEVDGRRVVLTHLDKVVFPVTGHTKAQLLQYYASIAPVLVPHAAGRLA
SFVRAPEGPHAQRWFAKRPPAGTPDWVTTAGEAGEPHIVVDSTPALVTMANLGAWEVHVP
QWTAAGGRDAHDRLVLDLDPGEGADLVLCCRVAERLRQMMEDDGLTAFPVTSGSKGLHLY
APLRSATEAAATGYAKALAARMRDEHPGLVVFSMTRSLRAGKIFIDWSQNASAKTTACPY
TLRLRDRPGVAAPVTWDEVASCRTAEDLAFTPEEVLRRAAVHGDLLAALDDAAGRGILP
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccgtcagcctcgcccgaccggcagacggtcgaggtggacggccgccgagtg
gtcctcacccacctggacaaggtcgtcttcccggtcaccggccacaccaaggcacagctg
ctgcagtactacgcgagcatcgccccggtgctggtgccgcacgccgccgggcgcctcgcc
tccttcgtccgcgcccccgagggcccgcacgcccagcggtggttcgccaaacgcccgccc
gccggcacgcccgactgggtgaccaccgccggggaggccggcgagccgcacatcgtcgtc
gactccactcccgccctggtcaccatggccaacctcggcgcctgggaggtccacgtcccg
cagtggaccgcggcgggcggccgcgacgcccacgaccggctcgtcctcgacctcgacccc
ggcgagggcgccgacctcgtcctgtgctgccgggtcgccgaacgcctgcgccagatgatg
gaggacgacgggctcaccgccttccccgtcacctccggcagcaagggactccatctgtac
gcgccgctgcggtccgccaccgaggccgccgccaccggctacgccaaggcgctcgccgcg
cgcatgcgcgacgagcaccccggccttgtcgtcttctccatgacccgcagcctgcgcgcc
gggaagatcttcatcgactggtcccagaacgcctccgcgaagaccaccgcctgcccctac
accctgcggctgcgcgaccgccccggcgtcgcggcccccgtcacctgggacgaggtcgcc
tcctgccggacggcggaggacctcgccttcacccccgaggaggtcctgcggcgcgccgcc
gtccacggcgacctgctggccgccctcgacgacgccgccggacgcggcatcctgccgtga
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