KEGG   Actinacidiphila glaucinigra: OIE69_28025
Entry
OIE69_28025       CDS       T09685                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
agla  Actinacidiphila glaucinigra
Pathway
agla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:agla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OIE69_28025 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:agla03400]
    OIE69_28025 (ligD)
Enzymes [BR:agla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OIE69_28025 (ligD)
DNA repair and recombination proteins [BR:agla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OIE69_28025 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: WSD62461
LinkDB
Position
6230498..6231397
AA seq 299 aa
MPAPSASPDRQTVEVDGRRVVLTHLDKVVFPVTGHTKAQLLQYYASIAPVLVPHAAGRLA
SFVRAPEGPHAQRWFAKRPPAGTPDWVTTAGEAGEPHIVVDSTPALVTMANLGAWEVHVP
QWTAAGGRDAHDRLVLDLDPGEGADLVLCCRVAERLRQMMEDDGLTAFPVTSGSKGLHLY
APLRSATEAAATGYAKALAARMRDEHPGLVVFSMTRSLRAGKIFIDWSQNASAKTTACPY
TLRLRDRPGVAAPVTWDEVASCRTAEDLAFTPEEVLRRAAVHGDLLAALDDAAGRGILP
NT seq 900 nt   +upstreamnt  +downstreamnt
atgcccgccccgtcagcctcgcccgaccggcagacggtcgaggtggacggccgccgagtg
gtcctcacccacctggacaaggtcgtcttcccggtcaccggccacaccaaggcacagctg
ctgcagtactacgcgagcatcgccccggtgctggtgccgcacgccgccgggcgcctcgcc
tccttcgtccgcgcccccgagggcccgcacgcccagcggtggttcgccaaacgcccgccc
gccggcacgcccgactgggtgaccaccgccggggaggccggcgagccgcacatcgtcgtc
gactccactcccgccctggtcaccatggccaacctcggcgcctgggaggtccacgtcccg
cagtggaccgcggcgggcggccgcgacgcccacgaccggctcgtcctcgacctcgacccc
ggcgagggcgccgacctcgtcctgtgctgccgggtcgccgaacgcctgcgccagatgatg
gaggacgacgggctcaccgccttccccgtcacctccggcagcaagggactccatctgtac
gcgccgctgcggtccgccaccgaggccgccgccaccggctacgccaaggcgctcgccgcg
cgcatgcgcgacgagcaccccggccttgtcgtcttctccatgacccgcagcctgcgcgcc
gggaagatcttcatcgactggtcccagaacgcctccgcgaagaccaccgcctgcccctac
accctgcggctgcgcgaccgccccggcgtcgcggcccccgtcacctgggacgaggtcgcc
tcctgccggacggcggaggacctcgccttcacccccgaggaggtcctgcggcgcgccgcc
gtccacggcgacctgctggccgccctcgacgacgccgccggacgcggcatcctgccgtga

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