Actinacidiphila glaucinigra: OIE69_39690
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Entry
OIE69_39690 CDS
T09685
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agla
Actinacidiphila glaucinigra
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agla03016
]
OIE69_39690
Enzymes [BR:
agla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OIE69_39690
Transfer RNA biogenesis [BR:
agla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OIE69_39690
Prokaryotic type
tRNA splicing ligases
OIE69_39690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WSD64586
LinkDB
All DBs
Position
8730474..8731886
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AA seq
470 aa
AA seq
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MEVVEEDPYRFRIARRAPMRVPGVVFASRDLLSHAEKALEQVVNVAALPGIVGASYAMPD
VHWGYGFPIGGVAATDVADGGVVSPGGVGFDISCGVRLLAADCDRAAIGPALPAIMDGLG
QDTPRGAVTGAVWHLGSDRLLERVLAGGSRYAVEEGHGEDGDLRRCEDDGAVADADTAQV
GARARERGLGQVGSLGSGNHFLEVQEVAEVYDEPVAAAFGLALGQVCVMIHCGSRGLGHQ
ICSDHVRAMDRAMRRYGIEVPDRQLACVPVDSPEGRAYLGAMAAAANYARANRQLLGELS
RRVFRREAGVRLTLVYDVSHNLAKIEEHEVDAAPRTLCVHRKGATRALPPGHPDLPADLR
GFGQPVLIPGTMGTCSYVLTGVPRGEAFHSTCHGAGREKSRHQAARGVSGRELRARLEAR
GIAVRASSWRGLAEEAPEAYKDVSAVVEASEGAGLCRRVVRLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgtggaagaggacccctaccgtttccgcatcgcccggcgcgcgccgatgcgc
gtgcccggcgtcgtgttcgcctcgcgcgacctgctgagccacgcagagaaggcccttgag
caggtcgtcaacgtggcggcgctgccgggcatcgtcggagcctcgtacgccatgccggac
gtccactggggctacggcttccccatcggaggggtggccgcgaccgacgtcgccgacggc
ggcgtggtctccccgggcggggtgggcttcgacatctcctgcggcgtacggctgctggcc
gccgactgcgaccgtgccgcgatcggacccgccctgcccgcgatcatggacggactgggc
caggacacgccgcgcggcgcggtcaccggagccgtctggcacctgggcagcgaccgcctg
ctggaacgcgtgctggcgggcgggtcccgctatgcggtggaggagggccacggcgaggac
ggcgacctgcgccgctgcgaggacgacggcgcggtggccgacgcggacaccgcccaggtc
ggcgcacgcgcccgcgaacgcggcctcgggcaggtcggcagcctcggctcgggcaaccac
ttcctggaggtgcaggaggtcgccgaggtctacgacgagccggtggccgccgccttcggc
ctcgcgctcggccaggtctgcgtgatgatccactgcggttcccggggactgggccaccag
atctgctccgaccacgtgcgggcgatggaccgcgcgatgcggcgctacggcatcgaggtc
cccgaccggcagctcgcctgcgtccccgtcgactcgcccgagggccgcgcctacctcggc
gcgatggccgccgccgccaactacgcccgggccaaccgtcagctgctgggcgagctgtcc
cgccgcgtcttccgccgcgaggcgggcgtccgtctcacgctcgtctacgacgtgtcccac
aacctggcgaagatcgaggagcacgaggtggacgcggcgccgcgcaccctgtgcgtccac
cgcaagggcgccacccgggcgctcccgcccggccatccggacctgcccgccgacctccgc
ggcttcggccagcccgtgctcatccccggcaccatgggcacctgctcgtacgtcctcacc
ggagtcccccgcggtgaggccttccactcgacctgccacggggccggccgggagaagagc
cggcaccaggccgcgcgcggggtcagcggcagggagctgcgggcgcggctggaggcccgc
gggatcgccgtacgcgcctcgtcctggcgcggcctcgccgaggaggccccggaggcgtac
aaggacgtctcggcggtggtggaggccagcgagggcgccggactgtgccgcagggtcgtc
cgcctggtgcccctcggtgtggtgaaggggtag
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