KEGG   Alnus glutinosa (common alder): 133851287
Entry
133851287         CDS       T10577                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03018  RNA degradation
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133851287
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133851287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aglu03019]
    133851287
   03041 Spliceosome [BR:aglu03041]
    133851287
Messenger RNA biogenesis [BR:aglu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133851287
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133851287
Spliceosome [BR:aglu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133851287
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 133851287
NCBI-ProteinID: XP_062143608
LinkDB
Position
12:complement(3069264..3074837)
AA seq 150 aa
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGREDGPGGRQAKGIGRGLDD
GSAKGPGGGRGRGGSGGKPGGNRGVGRGRG
NT seq 453 nt   +upstreamnt  +downstreamnt
atgcttccactttctctacttaagagtgcccaagggcacccaatgttggtggaactgaaa
aatggggagacctacaacgggcatttggtcaactgtgatacttggatgaacattcatctc
cgtgaagttatctgtacctctaaagatggtgatagattttggcgaatgcctgaatgctac
atccgcgggaatacaatcaagtaccttcgagttcctgatgaggtgatagataaggttcag
gaagaaaccaagagccgctcagataggaggccacctggggtagggcgcggaagggggcga
ggtagggaggatggtcctggaggacgccaagcaaaaggaattgggcgtggtttggatgat
ggaagtgctaagggtccgggtggaggccgaggcagaggtggatctggtggaaagcctggt
ggaaacagaggtgtagggcgtggccgtggctga

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