Alnus glutinosa (common alder): 133851287
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Entry
133851287 CDS
T10577
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133851287
09123 Folding, sorting and degradation
03018 RNA degradation
133851287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133851287
03041 Spliceosome [BR:
aglu03041
]
133851287
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133851287
mRNA degradation factors
5'-3' decay
Lsm complex
133851287
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133851287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
133851287
NCBI-ProteinID:
XP_062143608
LinkDB
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Position
12:complement(3069264..3074837)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGREDGPGGRQAKGIGRGLDD
GSAKGPGGGRGRGGSGGKPGGNRGVGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctacttaagagtgcccaagggcacccaatgttggtggaactgaaa
aatggggagacctacaacgggcatttggtcaactgtgatacttggatgaacattcatctc
cgtgaagttatctgtacctctaaagatggtgatagattttggcgaatgcctgaatgctac
atccgcgggaatacaatcaagtaccttcgagttcctgatgaggtgatagataaggttcag
gaagaaaccaagagccgctcagataggaggccacctggggtagggcgcggaagggggcga
ggtagggaggatggtcctggaggacgccaagcaaaaggaattgggcgtggtttggatgat
ggaagtgctaagggtccgggtggaggccgaggcagaggtggatctggtggaaagcctggt
ggaaacagaggtgtagggcgtggccgtggctga
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