Alnus glutinosa (common alder): 133851291
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Entry
133851291 CDS
T10577
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133851291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133851291
03009 Ribosome biogenesis [BR:
aglu03009
]
133851291
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133851291
Spliceosome [BR:
aglu03041
]
Complex A
U2 snRNP components
U2 related factors
133851291
Complex B
133851291
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
133851291
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
90S particles
Helicases
133851291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_30
Cas3-like_C_2
FtsK_SpoIIIE
AAA_7
Flavi_DEAD
AAA_SelU
nSTAND_NTPase5
NACHT
TsaE
AAA_29
RSA-1_N
Motif
Other DBs
NCBI-GeneID:
133851291
NCBI-ProteinID:
XP_062143612
LinkDB
All DBs
Position
12
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISAKISKSNGGGAAMNNNNGGINRWTGRPYSQRYYEILEKR
RSLPVWHQKDEFLQVLKANQTIILVGETGSGKTTQIPQFVLEAVDMENPDKRKKLMIGCT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLL
ERYQVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFSAPLMK
VPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCETPGDILVFLTGEEEIEDACRKILKE
VANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVIEGGPPGRKIVVSTNVAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFH
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMSKMLVVSPEFICSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNDDPSWCYENFVNHRALKSADNVRQQLVRIMARF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWIIDVAPHYYDLTNFPQCEAKRVLERLYKKREKDR
EESKNKK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaagtgagcttgttcgacgtggtggacgagacctcgatc
tcggcgaagatctccaaatcgaacggtggaggagctgcgatgaacaacaacaatggcggc
atcaatcggtggacgggaaggccgtattcgcagaggtactacgagatattggagaagagg
aggagcttgccggtgtggcaccagaaggacgagttcttgcaggtcctcaaggctaaccag
accatcatcctcgttggtgagactggtagtggcaaaaccactcagattccccagttcgtt
ttggaagctgttgatatggaaaatccagataaacgcaaaaagctgatgattggatgcact
cagcctcggagggtggctgcaatgtctgtttctagacgtgttgctgaagagatggatgta
actattggagaagaggttggttatagtatccgttttgaagactgcagtagtgcaaaaaca
gttttgaaatatctaacagatggtatgctgttgagggaagcaatgacagatccacttttg
gaacgttaccaagtcataattcttgatgaggctcacgaaagaacattggcaactgatgtt
ctatttgggcttctgaaggaggtgttgaaaaatagacctgacctgaagctagttgtgatg
agtgcaactcttgaggctgaaaagtttcagggttattttttcagtgcaccacttatgaaa
gttcctgggaggcttcatcctgtggagatattctacacccaagatcctgaaagggactat
ctggaggcagcaatccggacagttgtgcagattcacatgtgtgaaactcctggagatata
ctagttttcctcactggtgaggaggagatagaagatgcatgccggaaaatattgaaggaa
gttgcaaatctgggtgaccaggtgggacctgtgaaagcagtgcctctgtattctaccctt
cctccagctatgcagcagaagatctttgaaccagctccacctccagtgatagagggtggt
cctcctggaaggaagattgtggtctcaacaaacgttgcagaaacatctttgaccattgat
ggtatagtatatgtcattgaccctgggtttgcaaaacagaaggtttataacccacgagtg
cgtgttgagtccttgttggtatctccaatatctaaagccagtgcacatcagagatcgggg
cgtgctggaagaactcagcccgggaaatgctttagactttataccgagaaaagtttccat
aatgatcttcagccacagacctatccagaaatattgagatcaaaccttgcaaatacggtt
cttaccttgaagaaattggggatagatgacctggtgcattttgattttatggatcctcct
gctccagagacattgatgcgggcattagaggttttgaattacttgggagcgttagatgat
gatggaaatttgacaaagcttggggaaattatgagtgaatttccattagatcctcagatg
tcaaagatgctcgttgttagtcccgagttcatttgttcaaatgaaattctgtcgatttct
gccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagctgctgat
gaagcgaaagctaggtttgggcacatcgatggagatcacctgacgctcttgaatgtgtac
catgcttacaagcaaaacaacgacgatccatcttggtgctatgagaacttcgtcaatcat
agggcgttgaagtctgctgataacgttagacaacagctagtgcgtatcatggccaggttt
aacctcaagttgtgcagcactgatttcaacagccgtgactactacgtcaacataaggaag
gctatgctagcaggatacttcatgcaggtagctcacctggaaagaactggacactactta
acagtgaaagacaaccaagtggtgcacttgcatccttcaaattgcttggatcacaagcca
gagtgggtcatttataatgaatatgtcctaacaagcaggaatttcattcggacagtgaca
gacatccgtggtgaatggataattgatgtagcaccacactattatgatctgacgaacttc
ccccagtgtgaggccaaacgtgttcttgaaaggctatacaagaagcgggagaaggataga
gaggagagcaagaacaaaaaatga
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integrated database retrieval system
