Alnus glutinosa (common alder): 133851399
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Entry
133851399 CDS
T10577
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aglu03009
]
133851399
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133851399
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
90S particles
Helicases
133851399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
ATPase
nSTAND3
AAA_19
Sigma54_activat
Phosphoprotein
ResIII
PhoH
Motif
Other DBs
NCBI-GeneID:
133851399
NCBI-ProteinID:
XP_062143792
LinkDB
All DBs
Position
12:2284028..2293282
Genome browser
AA seq
1335 aa
AA seq
DB search
MLKKSKMEVCGKRSWSLEGCDSNALILPDKKRNKKKGMDKEPEMVKLDKKQKLSKSQKRK
LKKLEEEKEKALLLAKSVETLEKYKLPEDAFLLLHSSRDIGRAETMKEKRRRAVLVSKAG
LEVPDSDQPFERKGNDMADGGTEAEMDNIPSSPDFDEDDSLQPIIQEREALKNASDIDKI
ASRQDFKKDDSLHPMILERETAKNASVSFDSSKGAACGNAINGSGKADESQKVDYSRTIN
LQGLTAQGPLTAPTVVHVSRPIEVQNTRKDLPIVMMEQEIMEAINDNTTVIICGETGCGK
TTQVPQFLYEAGFGSSQSGIKRGIIGVTQPRRVAVLATAKRVAYELGFHLGKEVGFQVRY
DKRIGESCSIKFMTDGILLREVQNDFLLKRYSVIVLDEAHERSLNTDILIGMLSRIIRIR
QDEHEKQQQILHSGQSVSTEDMISPLKLVLMSATLRVEDFISGRRIFHDPPPVIEVPTRQ
YPVTVHFSKKTEIVDYIGQAFKKVLAIHKRLPHGGILVFVTGQREVQHLCRKLRKASKEL
IMKTLKGNAGNDETAVSETNSVEDGNMEINEAFDVYGNSVDQYTDRFSSYEEDEGDMDKE
DSDVSYDSETKSELEIDVDDGDPLHQTSQEDDRNLVDVLGEDGSLASLKTAFEALAGKSA
LNSISDYKQALPVSPEGCLDQSNASTGKKKGGENDICAGKLYVLPLYAKLSAADQLRVFK
EVKEGERLVVIATNVAETSITIPGIKYVVDTGREKVKTYNSSNGMETYEVQWISKASAAQ
RAGRAGRTGPGHCYRLYSSAVFSNILIDFSLAEISKMPVDGIVLLMKSMRIDKVQNFPFP
TPPKTTALVEAEHCLKALEALDSNGKLTPLGKAMARFPMSPRHSRMLLTVIQTMRMVKSY
TRSDLVLGYAVAAAAALSLSNPFVMQFEGSHVNKDDLEQDEKSGTLENKDVIDKQEKLRR
KKLKETARVSRAKFSNPSSDALTVAYALQCFELSGSPVEFCNDNALHLKTMEEMSNLRRQ
LLQLVFEKGLCGTEQDYSWTHGTLDNVEHAWKMVSSNNPPLLLNEEELLGQAICAGWADR
IAKRIRGVSGLSEGDRKAHAVRYQACMVKETVFLHRWSSVSRSAPEFLVYSELLQTKRPY
MHGVTSVKSEWLVKYAKSLCTFSSALTDPKPFYEPQNDQVFCYVIPTFGPHLWELPLHSL
PITNDVQRVAVFAYALLEGKVLPCLRSVRKLMAAPPSCILRPEASGQKRVGNLLTKLKTK
FIDSCTMLREVWMENPMELHSEILGWFQESFHRHFEVLWSQMHSEILLEPQERFPKKERA
KKKQSFCVKAGLEIL
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagaagagcaaaatggaggtctgcggaaaacgttcatggagtttggaaggttgt
gatagcaatgcactaatcttgccggataagaaaaggaacaaaaagaaaggcatggataag
gaacctgaaatggttaaattagataagaaacagaagctgagcaaatctcagaaaagaaag
ctgaagaagttggaggaggagaaggagaaagcacttttgctggcaaaaagcgttgagacc
ttggagaaatacaagcttccagaggatgcatttttgcttctgcattcttcacgagatatt
ggccgtgctgaaaccatgaaggaaaaacgtaggagggctgtactagtttctaaggctgga
ttagaagttccagacagtgaccagccttttgagagaaagggtaatgatatggctgatggc
ggaactgaagctgagatggacaatattccctcaagtccagatttcgacgaggatgattca
ttgcaaccaattatacaagaaagagaagccctgaagaatgcatctgatatagacaaaatt
gcttcaaggcaggattttaagaaggatgattcgttgcatccaatgatactggaaagagaa
accgcgaagaatgcgtctgtttcttttgactcctcaaaaggggcagcatgtggcaatgca
ataaatggatccggtaaggcagatgagagccaaaaggtcgattacagcaggacaatcaac
ctacaaggtttaactgcacagggacctctgactgccccaactgtagtgcatgtatctagg
ccaattgaggttcagaatacaaggaaggatcttccgatagtgatgatggagcaggagata
atggaagctataaatgacaataccactgttatcatatgtggagagactgggtgtggtaaa
accactcaagttcctcagtttctttatgaagctggctttggttcaagccagtccggtatt
aaaagaggcattattggtgttactcaaccacgtcgtgttgctgtccttgccactgccaag
cgagtggcatatgagcttggtttccatcttggtaaagaggttgggtttcaagttaggtat
gacaagcggattggagagagttgctcaatcaagttcatgactgatggaattttactacga
gaagttcagaatgattttttgttgaagcgttattctgtcatagttctcgatgaggctcat
gagagaagcttgaacacagacatactaattggaatgctttcacgtataattagaattcgc
caggatgaacatgagaagcagcaacaaattttgcattcaggacaaagtgtaagtacagaa
gatatgatatctccgttaaaacttgtgctgatgagtgccaccttgcgagtggaagacttt
atttctgggagaaggatatttcatgatcctccacctgttatagaagttcccactagacag
tatccggtgactgtacacttctcaaagaaaacagagattgtggattatatcggccaagca
tttaaaaaggttctggcaattcacaagaggttgccacatgggggcatacttgtctttgtc
actggccagagggaagtacaacacttatgtcggaagctacgtaaagcttcaaaggagttg
attatgaaaacattgaaggggaatgctgggaatgatgagactgcagtctcagaaactaat
tctgttgaggatggaaatatggagataaatgaagcatttgatgtttatgggaattcagtt
gaccagtatactgacagattcagctcttatgaggaagacgagggcgatatggataaggaa
gattcggatgtttcatacgattcagagacaaagagtgaactagaaattgatgttgatgat
ggggatccattgcatcagacatcccaagaggatgatcgcaatcttgtagatgttttaggg
gaggatgggagccttgcttcactaaagactgcttttgaagctttggctggaaaatctgca
ttaaattctatttctgattacaaacaggctcttcctgttagccctgaaggatgcttagac
caatcgaatgctagcacagggaagaaaaagggaggcgaaaatgatatctgtgcaggtaaa
ttgtatgttttgcctctttacgccaagctgtctgctgcagaccagcttcgtgtttttaaa
gaagtcaaggaaggagagcgtcttgttgtcattgccactaatgtggctgaaacctctata
actatccctggcataaagtatgttgttgatactgggagagagaaggtgaagacctacaac
tcctccaatggcatggaaacatacgaagtacagtggataagtaaggcatcggctgctcaa
cgtgctggcagggctggaagaactgggcctggacattgttaccgtctatactcttctgca
gtttttagtaatatacttattgacttttctcttgctgaaatatctaaaatgcctgttgac
ggcatcgtccttctcatgaaatcaatgcgtattgataaggttcaaaactttccatttcca
actcctcccaagaccactgcattggttgaagcagagcattgcttgaaggctcttgaagca
cttgatagcaatggaaaattgacacccttagggaaagccatggctcgttttcccatgagt
ccacgccactccaggatgctccttactgttatccagactatgaggatggtgaaaagttac
acccgctcagatctagtcctgggatatgcggttgcagcagctgctgctttgagtttgtca
aatccttttgtcatgcagtttgaaggaagtcacgtaaataaagatgacttagagcaggat
gagaaatctggtaccctagagaataaggatgtcattgacaagcaagaaaaattgaggaga
aagaaactgaaagaaactgcaagagtgtcccgcgcaaaattttctaaccctagcagtgat
gctctgacagtagcatatgctctgcaatgttttgaactttccggaagcccggtggaattc
tgcaatgacaatgcattgcacttgaaaaccatggaggaaatgtccaatctgcgaaggcag
cttcttcaactggtttttgaaaaaggcctttgtggtaccgagcaggattactcatggact
catggaactctagacaatgttgaacatgcttggaagatggtttcctccaataatccccct
cttttactgaatgaggaagagctcttgggccaagctatctgtgctggatgggcagatagg
attgccaaacgcattagaggagtttcaggactgtcagaaggagacagaaaagcacatgcc
gttcggtatcaagcttgcatggtaaaagaaactgtgttcctccatcgttggtcatctgtt
tcgcgttcagcccctgagttcttggtttacagtgaattgctacagacaaaacgaccatac
atgcatggtgtgacaagtgtgaaatcagagtggcttgttaaatatgccaagtctttgtgc
accttctcctcagcccttacagatcccaaacctttttatgagcctcaaaatgaccaagta
ttctgttacgtcattcctacttttgggcctcatttatgggaacttcccttgcatagtttg
ccaatcacaaatgatgtgcaacgagtagccgtgtttgcttatgcattgcttgaaggaaaa
gtgttaccatgcttaagatctgttcgtaagcttatggcagcccctcctagttgcattttg
aggcctgaggcgtcaggtcaaaaaagggtcggaaatcttttgaccaagctaaagaccaaa
tttattgatagctgcacaatgttaagggaggtctggatggagaaccctatggaactgcat
tcagaaattctgggctggtttcaggagagtttccacaggcactttgaagtgctttggtca
caaatgcatagtgaaattcttttagaacctcaagaacgctttcccaaaaaggaaagagct
aaaaaaaagcagtctttctgtgtaaaagctggactagagatattatga
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