Alnus glutinosa (common alder): 133852170
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Entry
133852170 CDS
T10577
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03022
Basal transcription factors
aglu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133852170
09124 Replication and repair
03420 Nucleotide excision repair
133852170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133852170
03036 Chromosome and associated proteins [BR:
aglu03036
]
133852170
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133852170
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133852170
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133852170
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133852170
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133852170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
AAA_19
Motif
Other DBs
NCBI-GeneID:
133852170
NCBI-ProteinID:
XP_062144847
LinkDB
All DBs
Position
12:complement(6815011..6821905)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQMEDVTVYFPYDHIYPEQYAYMLELKRSLDAKGHCLLEMPTGTGKTIALLSLITSYV
LSKPHNPVKLIYCTRTVHEMEKTLAELKLLHAYQTTHLGDRAKILAVGLSSRKNLCVNPR
VLAAENRDSVDASCRRLTATWVRAAAAANPNVPTCEFFEEYERSASSAVLPPGVYTLQDL
RVYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLNKMRQEIEKFKATDAGRLRAEYNRLVEGLAQRGNLPI
SDTWLSNPALPDDILKEAVPGNIRRAEHFLQVLRRLVQYLEGRLETDNVEKEGPVAFVAS
LNTYAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLVEMASIVPDGIVCFFV
SYSYMDGIVNSWNDNGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPRWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSSSSKTLLSQEDVEKMSDANLNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatggaggacgtaacagtgtacttcccctacgaccacatatacccagag
caatacgcctacatgctggaactcaagcgatccctggacgccaagggtcactgccttctc
gaaatgcccacaggcaccggcaagaccatcgctctcctctccctcatcaccagctacgtg
ctctccaagccccacaaccctgtcaagctcatctactgcacccgcaccgttcacgagatg
gagaagacactcgccgagctcaagctcctccacgcctaccagaccacccatctcggcgac
cgcgccaagatccttgccgtcggcctctcctcccgcaagaacctctgcgtcaacccacgg
gttctcgccgccgagaaccgggactccgtcgacgccagctgccgtagactcaccgccacc
tgggtcagggccgccgccgcggccaacccgaacgtgcccacgtgcgagttcttcgaggag
tatgagaggtcggcgtccagcgcggtgttgccgccgggagtttatacattgcaggatctg
agggtgtatggaaaggagaaagggtggtgtccatacttcttggcgcgacatatggtgcag
tttgcaaatgtggtggtttatagttatcagtatctgctggatcctaaggtggctgggatt
atatccaaggaaatgcagagggagtctgttgtagtgtttgatgaggcacataatattgac
aatgtttgtattgaggctcttagtgttagtgttagaaggcagacccttgaaggggccaga
aggaatctcaataaaatgcgtcaggagattgagaagttcaaggctacagatgctgggaga
ctgcgtgcagaatacaatcggcttgttgagggtttggcacaaagaggaaacctgcctatc
tcggacacctggctctctaatcctgccttacctgatgatattttgaaggaggcggtgccg
ggaaatattcgtcgagcagagcattttctccaagtcttacgtagattggtccaatatctg
gaggggcggctagaaactgataatgttgagaaggaggggcctgttgcgtttgttgcctct
cttaatacctatgctggaattgatcaaaaaacattgaaattttgttatgatcgcctacat
tcactgatgttgacactagaaatcaccgatacagatgagttcttacacatccaaacaata
tgtgactttgcaacactcgtggggacgtacacgcgtggtttttcaattataattgaacct
tttgatgagagaatgccgcatattcctgaccctgtgcttcagcttagttgccatgatgct
tctcttgccataaagccagtattcgatcgatttcagtctgttgtcataacatctggaact
ctgagtccaattgatctctacccccgtcttcttaatttccatccagttgtcagtcgaagt
tttaaaatgtccttaacaagagattgcatttgcccaatggttctcactcgtggaagcgat
cagcttccagtcagtaccaaatttgatatgagaagtgatcttggtgttgtaagaaattat
gggaggctcttggtggagatggcatctattgttccagatgggattgtatgcttttttgtc
agttactcatacatggatggaatagtgaatagttggaatgacaatggaattttgaaggaa
ataatgcagcataagcttgtattcatcgagacacaggatgtggtggaaactactttggct
cttgacaactatcgcaaggcttgcgattgcgggaggggtgctatatttttctctgttgcc
aggggaaaagttgctgaaggtatagactttgatcgtcattatggtagactagtcatcatg
tttggtgttcctttccagtacacattgagcaagattttgcttgcccgattggaatatcta
cgggacacctttcagataaaggaaggagattttctgacttttgatgccttgagacaagct
gctcaatgtgtgggccgtgtaattcggtcaaaggctgattatgggatgatgatctttgct
gacaaaaggtatagccgtcatgacaagcgctctaaattgcctaggtggattctgtcgcat
ctacgtgatgcacacctgaatttgagcacggacatggctctgcatatagcacgggagttc
cttaggaagatggctcaaccatatgataaagctggtagcagcagtagcaaaacccttttg
tcccaagaagatgtggagaagatgagtgatgccaacttgaacgaaatgttgtattga
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