Alnus glutinosa (common alder): 133852469
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Entry
133852469 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133852469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133852469
03012 Translation factors [BR:
aglu03012
]
133852469
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133852469
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133852469
Translation factors [BR:
aglu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133852469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NACHT
nSTAND3
ATPase
AAA_19
Dicer_dimer
T2SSE
Motif
Other DBs
NCBI-GeneID:
133852469
NCBI-ProteinID:
XP_062145221
LinkDB
All DBs
Position
1:complement(45346654..45385657)
Genome browser
AA seq
1198 aa
AA seq
DB search
MPSPTPFPSLLHTPPQFPFTSHPKTLKSSHSTPPFLAMKDRPPSSYGAVYVPPHHRLRSV
ITSPSYTSAALIDSKLREAQSAALNHKASPLPYLQTQQEQLHKGNSQNDDRLSEEGSDRE
LESLSQRGDSPSNNVVEWKRKFTMLLHDKEKQELISREKKDRHDFEQISALANRMGLYSQ
LYSKVVVFSKVPLPNYRFDLDDRRPQREVALPLGLLRRVDSYFGEYLSQKAKTRESFSDI
SFSRTSSSCSIATDEGLFEQPEPLAASKTAIEKILRRRSLQLRDQQQAWQESPEGRKMLE
FRRSLPAYKEKDTLLTTIARNQVVIVSGETGCGKTTQIPQFILESEIEYVHGAVCNIICT
QPRRISAMSVSERVASERGEKLGEHVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNL
KGVTHVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLDAELFSSYFGGAQIIH
IPGFTYPVRTHFLENIVEMTDYRLTPYNQIDDYGQEKMWKMSKHAPRKRKSQIASVVEDA
LRAADFKEYSPQTRESLSCWNPDCIGFNLIEYLLCKICENERPGAILVFMTGWDDISSLK
DKLQAHPFLGDPSRVLLLACHGSMASSEQRLIFDETDDGVRKIVLATNIAETSITINDVV
FVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGECYHLYPRCVYDAFA
DYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENE
NLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPVLTIVAGLSVRDPFLTPFDKKDLAEAA
KSQFSRDYSDHFALVRAYEGWKDAERDIAGYEYCWRNFLSVQSMKAIDSLRKEFFSLLKD
TGLVDGNTTSYNAWSHDEHLVRAVICNGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSV
NARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDTDGHLKMLGGYLE
FFMNPSLADMYQSLRKELDELIQKKLLCPRMDIDTHHELLSTVRLLVSEDQCDGRFVFGR
QVLKPSKTSVMATKPSLVSRIESGPGGDNSKSQLQTLITRAGYVAPIYKTKQLKNNQFRA
TVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGNQAGHDCINNMSILLKKSKKDHS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgccctctcccactccctttccctctctcctccacactcctccacaattccctttcact
tcgcaccccaaaaccctaaaatcctcacactctactcctccattcctcgcaatgaaggac
cggcctccgtcctcgtacggcgccgtttacgtccctccccaccaccgtctgcgctccgtc
atcacttcccctagttacacctccgccgctctcatagactccaagctccgcgaagctcaa
agcgccgctctaaaccataaagccagtccactgccttacttgcaaacccagcaggagcag
ctccacaagggaaattcgcagaacgatgatcgcctctccgaggaaggctccgatcgcgag
ttggaatcgttgtcgcaacggggtgattccccctctaataacgttgttgagtggaaacgg
aagtttacgatgcttttacacgacaaggagaagcaagagttgatctcaagggagaaaaag
gatagacatgattttgagcaaatatcagctttggcaaacagaatggggctgtatagccaa
ctgtattcaaaagttgttgtctttagtaaggtcccactgccgaactacagattcgatctg
gatgacagacgtccacagagggaggtggcattgcctcttgggttgctaagaagagttgat
tcctattttggagaatacctttctcaaaaggctaagactagggaaagcttttcagatata
tcattttcgagaacgagtagtagctgtagtattgccactgatgagggtctttttgagcaa
cctgagccactggcagctagtaagactgctattgaaaaaattcttaggcgaagaagtttg
caactgcgtgatcagcaacaagcttggcaggaatctcctgaaggtagaaaaatgctggaa
tttcgtaggagtctcccagcttataaagaaaaggatacgttgctgacaactattgcacga
aatcaggttgttattgtctcaggtgaaactggctgtggcaagaccactcaaattccccaa
ttcatcttagaatcagagatagaatatgttcatggagctgtttgtaacattatctgtacc
cagccaagacgaatatctgctatgtctgtttctgaaagagttgcttcggagagaggggag
aaattgggtgaacatgttggatataaagttcggttggaaggtatgaaagggagggatacc
cgccttctcttttgcaccactggtatcttgttgagacgattgctagttgatagaaacttg
aaaggcgtaactcatgttattgtggatgagattcatgagcgcggaatgaatgaagatttt
ttgcttatcgtcctaagagatctccttcctcgccggccagaacttaggctaattctgatg
agtgcaaccctcgacgcagagcttttctcgtcctactttggtggggctcagataattcac
atcccgggttttacatacccggttcggactcatttcctggagaatattgtggaaatgacg
gattacagattaaccccgtacaaccagattgatgattatggtcaagaaaagatgtggaaa
atgagcaaacatgcaccaagaaagaggaagagccaaattgcttccgttgttgaggacgct
ctcagagcagccgattttaaggagtatagcccccagactcgtgaatctttgtcatgttgg
aatcctgattgtattggttttaatctcatagagtatcttttatgcaaaatatgtgaaaat
gagaggccaggtgctatcctagtttttatgactggctgggatgacataagttctctgaaa
gataagttgcaagcacatcctttcttaggagatccaagccgagttttgttgctagcatgc
catgggtctatggccagttcagagcagaggttaatatttgatgagactgacgacggagtg
aggaaaatagtgcttgctactaatatagctgagacaagtattactattaatgatgttgtg
tttgttattgactgtggaaaggctaaagagacatcttatgacgcactgaataacactcct
tgtttgcttccgtcctggatttccaaggtttctgctcaacagagaagaggaagagctggc
cgcgttcgacctggagaatgttaccatctctatcctagatgtgtatatgacgcttttgca
gactatcaattgccagaaattttaaggacacctttgcagtctctctgtctgcaaataaag
agtttgaaacttggaagtatttctgagttcttatctagggctttgcagtcaccagaatta
ctagcggttcaaaatgcaattgaatatctcaaaattattggcgcccttgatgagaatgaa
aatctgacagtcttgggacgctatttgactatgcttccaatggaaccaaaacttggaaag
atgctcatcttgggggctatcttcaattgcctggatccagtattgactattgttgctggc
ctcagtgtcagagatcctttcttaacaccatttgacaagaaggatcttgcagaggctgca
aaatctcagttttcccgagattacagtgaccactttgctcttgtccgggcctatgaaggt
tggaaagatgctgaaagagatattgctggatatgaatactgctggagaaattttctttca
gtgcaatcaatgaaagctattgattctcttaggaaggagtttttctctttgctcaaggat
actggcttggttgatggcaacacaacctcctacaatgcatggagtcatgatgagcatctt
gtccgagcagttatttgcaatgggctgtatcctgggatttgctctgttgtgcacaatgaa
aagtcattttcattgaaaaccatggaagatggccaggtgcttctatactcgaactcagtc
aatgctcgggaatctaaaattccatatccatggctagttttcaacgagaagataaaagtg
aattctgttttcctccgggattcaacagctgtttctgattcagtgcttctcctatttggt
gggagcatctcaagaggggatactgatggacacttgaaaatgttgggaggatatctcgaa
ttcttcatgaatccttctttagcagacatgtatcaaagtttaaggaaagaacttgatgag
ctgattcagaaaaaactactgtgtcccagaatggacatagacacccatcatgagctccta
tctactgtacggttgctggtttcagaggaccaatgtgatggaagatttgtatttggccgc
caggtccttaagccctcaaagacatctgttatggcaacaaagccgtccttggtttcaaga
attgaaagtggacctgggggtgataattctaagagtcagctccagacattgattaccagg
gctggatatgttgcacccatttacaagactaagcaactgaagaacaaccagttccgggcc
actgtggagtttaatggaatgcaaattatgggtcagccttgcaacaacaagaagagtgcg
gagaaagatgctgcagctgaggctcttcagtggcttatgggtggaaaccaagcaggccat
gattgtataaataatatgtcaatcttgctgaagaaaagcaagaaggatcatagttaa
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