Alnus glutinosa (common alder): 133854652
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Entry
133854652 CDS
T10577
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133854652
09122 Translation
03013 Nucleocytoplasmic transport
133854652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133854652
03041 Spliceosome [BR:
aglu03041
]
133854652
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133854652
Spliceosome [BR:
aglu03041
]
Complex C
Other components
EJC/TREX
133854652
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133854652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
133854652
NCBI-ProteinID:
XP_062146883
LinkDB
All DBs
Position
13:24664236..24742014
Genome browser
AA seq
1887 aa
AA seq
DB search
MSLPPVQCICVTEDLLREWRSGNPSFKVPDPVPMLRFLYELCWTMVRGDLPFQKCKAALD
SVEFTASVSDEELASGFADIVTQMAQDLAMPGEYRSRLTKFAKWLVESALVPLRLFQERS
EEEFLWEAEMIKIKAQDLKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQDSEAS
AQNVSAATIGIIKSLIGHFDLDPNRAFDIVLECFELQPDNRIFLELIPIFPRSHASQILG
FKFQYYQRMEVNCPVPFGLYKLTALLVKEEFIDLDSIYAHLLPRDDEAFDHYNTFCAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMETEAVAERSPELENNQTLGLLTG
FLSVDDWYHAHILFDRLSPLNPVEHIQICNSMFRLIEKSISSAYATVRQANLQSFGPSSG
ASINVVDTANSSVRGFFVDLPSELFQMLACAGPYLYLDTLLLQKVCRVLRGYYLSALELV
GSGDEALNHESIIGGNRLPRLHLKEARSRIEEALGTCLLPSLQLIPANPAVGQEIWEVMS
LLPYEARYRLYGEWEKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA
NPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKEDGLN
LSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTE
NLTEEQLDAMAGGETLRYQATSFGVTRNNKALIKSTNRLRDSLLSKDEPKLAVPLLLLIA
QHRSVVVINADAPYIKMVCEQFDRCHGTLLQFVEFLCSAVTPALAYGQLIPSLDDLVHLY
HLDPEVAFLIYRPVMRLFKCRGTSDVFWPLDDSDATNIASTNLASEPTEYSGNMVLDLGS
PRKPIMWSDLLDTVRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEISKQHAAL
KALEELSDNSSSAIAKRKKDKERIQESLDRLTTELHKHEENVASVRKRLSREKDKWWSSC
PDTSKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLCETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FVRVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKTGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKASWVTDEEFGNGYLDNKPALPLSSKSSAVNSAPVQSSS
SKVSQSETAGGKAVATINLYSDSGNSVKEQILKTKQADGRSERTESLVNAKSDPGSLKLK
AGNGSDTQSSLPSAAVQSGTSRSIDNPKQVDESTRTLDENMAKPAPKNSTEAELRALAKR
SVSAASIAKTPKQDLAKDDSRSGKAVARTSGSATGDKDLSTHASEGRQVGATNSTSAVTA
NGNTVSASAKGSTTSARTSSDTHGNESKAESGAAKSSDIRISAVKDDGAEVSEVPRPPSR
VVHSPRHDNSAIASKSSDKLQKRGSPSEEPDRLSKRRKGDSETRDLEGDVRLSDRERSVD
HGTDEQSVYRPTDKPLDRSKDKGNERYDRDYRDRVDRPDKSRGDDIFSEKSRDRSIERYG
RERSVERLQERGSDRNFDRLPDKGKDDRNKDDRSKLRYTDTSAEKSHVDDRFHNQSLPPP
PPLPPNVVPQSVNTGRRDEDADRRFGGTRHSQRLSPRHEEKERRRSEENSLASQDDAKRR
RDDDFRERKRDEREALSMKAEEREREREREREKANILKDDMDASAASKRRKLKREHLPSG
EAGEYSPVAPPPPPLSIGVSQSYEGRDRGDRKGAMIQRPGYSDEPSLRIHGKEVATKMTR
RESDPIYDREWDDEKRQRVEQKRRHRK
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctccctcctgtacagtgcatatgcgtcacagaggaccttcttcgcgaatggagg
agcggaaaccctagcttcaaggtccccgaccccgtccccatgcttcgcttcctctacgag
ctctgctggaccatggttcgcggcgacttgccgtttcagaagtgcaaagcggcgttggac
tcggtggagttcacggctagtgtatcggacgaagagttggcttcgggtttcgcggatatt
gtgacccaaatggctcaagatcttgcaatgccaggagagtatcgttctcgcctcacaaaa
tttgcaaaatggctggtggaatctgcattggttcctttgaggcttttccaggagcgttct
gaggaagaatttctatgggaggctgaaatgatcaagataaaagctcaggatttgaagaac
aaagaggtcagagtaaatactcgtcttctttatcagcaaacaaaatttaaccttctacga
gaagaaagtgagggctatgccaagctggttacccttctgtgccaagactctgaagcttca
gctcaaaatgtatcagcagcaacaataggcattattaagtcattaattggacatttcgat
ctggaccctaatcgtgcgtttgatatcgttttggagtgttttgaacttcagcccgataac
agaatctttctggaactgattccaatttttccaaggtctcatgcttcacagattcttggt
ttcaaatttcaatattatcagcgtatggaagtaaattgtcctgtaccgtttgggctgtat
aagcttactgctttgctggtgaaggaggagtttattgatcttgatagcatatatgcacat
ttacttcccagggatgatgaggcatttgaccattataatactttttgtgccaagcgactt
gatgaggcaaacaaaattggaaagataaatcttgcggctaccgggaaggatttaatggat
gatgagaaacaaggagacgtgacgatagatctttttgctgctttagacatggaaactgag
gcagttgctgaacgatctccagagcttgaaaataatcaaacattgggcttacttactggt
ttcctttctgtggatgattggtaccacgcgcatatactatttgatcgtctctcaccactc
aatccagtggaacacattcaaatctgtaacagcatgtttaggcttatcgaaaaatcgatc
tcttccgcctatgccactgtacgtcaagcaaatttgcaaagctttgggccttcctcagga
gccagcatcaatgttgtggatacagcaaattcatcagttcgtgggttttttgttgatctt
cccagtgagctatttcagatgctggcttgtgctggaccttatctttaccttgatacttta
ttgcttcagaaggtatgcagagtattaagaggctactacttgtctgcactagagcttgta
ggtagtggtgatgaagcattgaatcatgaatccattattggtgggaatcgacttcctcgt
ctgcacctgaaggaagctaggtcaaggatagaggaagccttaggaacatgtttacttcct
tctttacagttgatacctgcaaatccagcagttggccaggagatctgggaagttatgagt
ctccttccatatgaggcgcgttatcgtttatatggtgaatgggaaaaagacgatgagcgg
attcctatggttttggctgcacggcaaacagccaagttggacactcgaagaattttgaaa
agacttgcaaaggaaaatctaaagcagttgggtcggatggttgcaaaactagctcatgcc
aatccaatgactgtactccgtacaattgttcaccagattgaggcatacagggatatgatc
acccctgtagtagatgcattcaagtatttaacacagctcgagtatgatgttttggaatat
gttgttattgagcgtttggcacaaggtgggcgtgataagctaaaagaggatggcctaaat
ttgtcagattggcttcagtcgttggcttcattttggggtcacctgtgtaagaagtaccca
tcaatggaattgaggggtcttttccagtatcttgtgaaccagttaaaaaaggggcaggga
attgagcttgttctcttgcaggagcttattcaacaaatggcaaatgtccagtacacagag
aacctgactgaggaacagctggatgccatggcgggtggtgagactctccgctatcaggca
acttcttttggagtaacacgaaataacaaggccttgatcaagtcaactaacaggctaagg
gactcattgctttcaaaagatgaaccaaagttggcagttcctcttttgttacttattgct
caacatcgttctgtggttgtcataaatgcagatgccccttatataaagatggtttgcgag
cagtttgatagatgccatggtactcttcttcaatttgtggaattcctttgcagtgcagtg
acaccagcgttggcttatggtcagttgattccctcgcttgatgatcttgtccatctttac
caccttgatcctgaggttgcttttttgatatatcgccctgtaatgaggctcttcaagtgt
cgggggacttctgatgtcttctggcctttagacgacagtgatgctacaaatattgcttcc
acaaacttagcatctgaacctactgaatattctggcaatatggttttggatcttggctct
ccaaggaagcctataatgtggtctgatcttcttgatactgttagaaccatgttaccttca
aaagcctggaacagtctgtctcctgatctctatgcgacattttgggggcttactctctat
gatctttatgttcctagaaatcgttatgagtctgaaatttccaagcagcatgctgctctc
aaggctctggaagagctttctgataactcaagttcagcaatcgcgaaaaggaagaaagac
aaagaaagaattcaagaatctctagatcgcttgactactgaactccataagcatgaagaa
aatgttgcatctgttcgtaaacggctttctcgtgaaaaagataagtggtggagttcctgc
cctgatacttcgaagatcaacatggagtttcttcagcgttgtatttttcctcgctgtact
ttcagtatgccagatgctgtctattgtgccatgtttgtacacactcttcattcccttgga
acgccattttttaacacagtgaaccacattgatgttttgatatgtaagaccttacaacct
atgatatgctgctgcactgaatatgaagcgggtagacttggaaggtttttatgtgagacg
ctaaagattgcttactattggaagagtgatgaatctatttatgagcgtgagtgtggaaat
atgccaggctttgctgtttattatagatatccaaacagccagcgagttacatatggccag
ttcgtcagggtacattggaaatggagtcaaaggataacaaggttattgattcagtgcttg
gaatctactgagtacatggaaattcgaaatgctcttataatgttgacaaagatttctagt
gttttccctgttactcgaaagactggtataaatcttgaaaagcgggtagctaagatcaaa
agtgatgaaagagaggatctcaaggtgttggcaacaggtgtcgctgctgctttggctgct
agaaaggcttcctgggttacagatgaagaatttggcaacggctatcttgataataagcct
gcgctaccgctttcttcgaagtcttcagctgttaattcagcacctgtgcaaagtagttct
tccaaagtttctcaaagtgaaactgctgggggaaaagcagttgcaacaataaatctatat
tccgattctgggaattctgtgaaagaacagatattaaaaacaaaacaagcagatgggagg
tcagaaagaactgaaagtcttgtaaatgcgaagtctgatcctggaagtctaaaactaaaa
gctggcaatgggtctgatacccaatcatccttaccctcagccgctgtacaatctggaaca
tcaagatcaatagataatccaaagcaagtggatgaatccacaagaacattggatgaaaac
atggcaaaacctgctccaaagaactctacagaagctgagttgagagctttagcaaaacgg
tcagtgtctgctgcatcaattgctaagacaccaaaacaagatcttgcaaaagatgatagt
aggtctggaaaagctgttgccaggacttctggctctgcaactggtgacaaggatctttca
actcatgcatcagagggcaggcaggttggggctactaattctacctctgcagtcaccgca
aatggtaacacagtttcagcttcagctaaaggttcgactacatctgctagaacatcatca
gatactcacggtaatgaatcaaaggctgagagtggagctgccaagtcttccgatataagg
atttctgctgtaaaggatgatggtgctgaagtttctgaggttccaaggcccccttctcgt
gttgttcattctcctaggcatgataattctgcaattgcctccaagtctagcgataagctg
caaaagagaggaagtccttctgaagaacctgatagactaagtaaacgccggaaaggggat
tctgaaacaagagatttagagggtgatgttcgattgtctgatagagagaggtctgtggat
catggaactgatgaacaatctgtctataggcccacggataagcctttggataggtccaaa
gataagggcaatgagagatatgacagggactatagggatagagtagatcgtccagataag
tcacgtggggatgacattttctctgaaaaatctagggataggtcaatcgaaagatacgga
agagaacgttcagttgagagacttcaagagagaggttctgataggaattttgataggctc
cctgacaaaggtaaagatgataggaacaaagatgacagaagtaaattaaggtacactgat
acatctgcagaaaaatctcatgttgacgatcggtttcataatcaaagcttgcctccacct
ccacccttaccacctaatgtggttccccagtctgtcaatactggtagaagagatgaagat
gctgatagaaggtttggaggcacccgacattctcaaaggctatctcctagacatgaagag
aaagaacgcagacgatctgaagagaattccttggcttcacaggatgatgcaaaacgtaga
agagatgatgatttccgggagagaaagcgagatgaaagagaggcactgtcaatgaaggcg
gaggagagggaaagagaaagggaaagggagagggagaaagcaaacattttaaaagatgat
atggatgcaagtgcagcttctaagaggcggaaacttaaaagggagcatctgccatcaggg
gaggctggtgagtattcacctgtggctccgccacctcctccccttagtattggtgtgtca
caatcatacgaaggaagagacaggggagaccggaagggagcaatgattcagcgtccaggt
tactcagacgagccaagtctaaggattcatggtaaagaagttgcaaccaaaatgacccgt
cgcgaatcagaccccatctatgaccgtgagtgggatgacgagaagaggcaaagagttgaa
caaaagcggaggcaccgaaagtga
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integrated database retrieval system
