Alnus glutinosa (common alder): 133854786
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Entry
133854786 CDS
T10577
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu04120
Ubiquitin mediated proteolysis
aglu04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133854786
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133854786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aglu04121
]
133854786
Enzymes [BR:
aglu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133854786
Ubiquitin system [BR:
aglu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133854786
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133854786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_like
Beta-prop_DCAF12
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
133854786
NCBI-ProteinID:
XP_062147043
LinkDB
All DBs
Position
13:19122533..19124051
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AA seq
411 aa
AA seq
DB search
MGAIHWSTNPKASNTSISTASYEWEMKNLSTEFHPPTQERKGEEKESIEEDKQEKQENEK
DEEEEERARCEWDFNLSTIVSSDAAGAGTDTLGVIEFDPSDSLVATGGIARKIRIYSLSS
LLPHESSNNATTSLDHANACDFCICTPAKLSSLRWKPGSDGRVLGSGDYDGVIMEYDLER
RMPIFERDEHGGRRVWSVDYSRWVPVMGASGSDDGTMQMWDPRCEGGKCMATVQPSVRRS
PVCCVEFNPIGGALVAVGCADRRAYGYDIRKMADPVVVFDGHSKTVTYVRFLDAHTMVTA
GTDGCLKLWSINDSQIIRTYKGHVNNRSFVGLSVWRNGGLLGCGSESNEVFVYNRRWSEP
IWVHGFEPVTRAGCDHGFVSSVCWRQTGDDRCTLVAGGSDGVLQVFVGKRK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgggagccattcattggtccacaaacccaaaagcctccaatacatccatctccaccgct
tcatatgaatgggaaatgaaaaacttatccacagaattccatcccccgacccaagaaaga
aaaggagaagaaaaagaaagcatagaggaagataaacaagagaaacaagagaatgaaaaa
gatgaagaagaagaagaaagagctagatgtgagtgggattttaatctctccaccattgtt
tcttccgacgcagcaggagcggggactgacacccttggagtaatcgagttcgacccgtct
gatagccttgtcgccaccggcggtattgcaagaaagatcagaatttatagtttaagctct
ctgttgcctcatgaaagtagtaataatgctactacttcgttagaccatgctaatgcatgt
gatttctgcatatgcacccctgcaaagcttagcagcctgaggtggaaacccggttctgac
gggcgcgtcttggggtccggagactatgacggggtgatcatggagtatgaccttgagaga
agaatgcccattttcgagcgcgacgagcatggcgggcgcagagtctggagcgtcgactat
tcgcgttgggttccggttatgggtgcgtccgggtcggacgacggcaccatgcaaatgtgg
gatccacgttgcgaaggtgggaaatgcatggccacggtgcagcctagcgtgcgacgcagt
cccgtctgttgtgttgagttcaatccgatcggtggagcactagtagccgttggatgtgcg
gaccggagggcgtacgggtatgacatccggaaaatggcggacccggttgttgtgtttgat
gggcatagtaaaacagtaacatacgtccgatttctggatgcccacacgatggtaacagcc
gggactgatgggtgtttgaagctatggagtatcaatgattcccaaataattcgcacgtat
aagggacacgtgaacaaccggagctttgtcgggctatccgtgtggaggaatggcgggtta
ctcggatgcgggtcggaaagtaacgaggtttttgtgtataataggaggtggagtgaaccg
atatgggtgcatggatttgagccagtaactcgagccgggtgtgaccacgggttcgtcagt
agtgtgtgctggaggcaaactggggacgacaggtgcactctagtggcagggggatcagat
ggggttttgcaagtttttgtggggaaaaggaagtaa
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