Alnus glutinosa (common alder): 133855033
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Entry
133855033 CDS
T10577
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133855033
03015 mRNA surveillance pathway
133855033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133855033
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133855033
5.6.2.5 RNA 5'-3' helicase
133855033
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133855033
mRNA cycle factors
Common to processing body (P body) and stress granule
133855033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
PhoH
ATPase
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
133855033
NCBI-ProteinID:
XP_062147311
LinkDB
All DBs
Position
13:24372282..24387846
Genome browser
AA seq
1283 aa
AA seq
DB search
MDSQPNNLFETVSQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSWPTPSDSLSDPTDRG
PGSDHPSDSSPVSAAPGGATKARAGASGSTSNPNTNSINNNNNNSHSNSNNQVVEALAAG
MGGLNFEETGDDDGYEYGKGDFTEHACRYCGVSNPSCVVRCNVPSCRKWFCNSRGNTSGS
HIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCL
SVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPD
ASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWD
VGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALEL
RASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMV
RNTLPKRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQG
QVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSE
LHKLQLLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQV
LIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV
KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMG
QEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL
RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL
GNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGAPGV
VANDAFGSAASSGPNADRRSIRGRGTFVSPGPPNGTHKPGVHPAGYPMPRVPLPPFHGSP
HSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGSAGAPIGSHLPHHQGTQQAIGNIG
STFNFPALENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQDFLGDDFKSQ
GSHVPYNVADFSTQASQSGYGVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDY
MPHGSQGLFTQVGFNDPSQDDASQSHFGVANSNPLQSQGLMNSLYSQPFAHYNTQPPLNL
QAPQQQPPQVQSSSQNQKIHYNG
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagccgaacaacctgttcgaaacggtgtcgcagccggacacggctaacgat
gcctacaccttcctcgagttcaacacccagggcgaggacttcgactacccggagttccgc
gatccgattcgctcatggcccacgccatccgactcattgtccgacccgaccgaccgcggc
cccgggtcggaccacccttctgactcctcgcccgtatccgctgcaccgggcggcgccacc
aaggcccgggcaggagcctcgggcagcaccagtaatcctaatactaacagcatcaacaat
aacaacaacaatagtcatagtaatagcaataaccaggtggttgaagccctagcggccggg
atgggagggctgaacttcgaggagacaggagacgatgacggctacgagtacgggaaaggg
gatttcacggagcacgcgtgccggtactgcggagtgtccaatccgtcctgcgtagtgcgc
tgcaacgtcccgtcgtgccgcaagtggttctgcaattccagggggaacacgtccggctcg
catatcgtcaatcacctggttcgagcaaagcacaaggaagtctgtcttcataaagacagc
cctttgggagaaactatccttgaatgctacaattgtggatgccgcaatgtgttcttgctt
ggatttatttcggcaaagacagagagtgtggttgttcttctttgtagagaaccttgccta
agtgttaatgcattgaaggacatgaattgggacctgagtcagtggtgtcccctgattgat
gatcggtgctttttgcaatggcttgttaagatcccatctgaacaggagcagttgagggca
cggcagatcagtgctcaacagataaacaaggtagaagaactttggaagacaaatcctgat
gcttctcttgaagatcttgaaaagcctggtgtggacgatgaacctcagcctgtagttttg
aagtatgaagatgcatatcagtatcaaaatgtatttgcaccactaattaagcttgaggct
gactatgataagatgatgaaagaatctcaaagcaaggacaatgtcacaatccggtgggat
gttggtcttaacaagaagcgtgttgcatattttgtttttccgaaggaagacaatgagttg
cgtcttgtacctggagatgagttacggttgcgttattctggggatgcagcacacccagca
tggcagtctgtggggcatgtgatcaagctgactgcgcaagaggaggttgcacttgaacta
cgtgctagtcagggagttccagttgatataaaccatggtttcagtgttgattttgtatgg
aaaagtacaagctttgatcgcatgcagggagcaatgaaaacatttgcggtggatgagact
agtgttagcggttatatttaccaccacttgttgggccatgaagttgaagttcagatggtt
cgcaatacgttgcctaaacgttttggtgcacctggtcttccggagctcaatgcatctcaa
gtgtttgctgtaaagagcgtccttcaaaaacctataagcttgattcaaggcccacctggc
actggaaaaactgtcacttccgcagcgattgtatatcacatggccaaacaaggccagggg
caagttttggtttgtgcccctagtaatgtggctgtagaccaactagctgaaaagataagt
gcgactgggctaaaggttgttaggctttgtgcaaagtcgagagaagctgtgagttctccg
gttgagcatttaacccttcactatcaggttcgacatcttgacacatctgaaaagagtgaa
cttcacaagttacaactactgaaagatgaacaaggagaactgtctagcagtgatgagaaa
aagtataaagcactgaagcgggcaactgagagggagatttctcagagtgctgatgtcatc
tgttgcacatgtgttggtgctggagatcctcgattggcaaattttaggttccgccaggta
cttattgatgagtctactcaggcaacagaacctgaatgccttattcctttggttcttggg
gcaaagcaggttgttcttgttggtgaccattgccagcttggtccagtcattatgtgcaag
aaagcagctcgtgctggcttagcccagtctctttttgaacgtcttgttctacttggtgtg
aaaccgattagattgcaggttcaataccgtatgcacccatctctttcagaattcccatct
aacagcttctatgaaggcacactacagaatggggttactgtcaatgaaaggcaatcatcg
ggcatcgactttccttggcctgtgcccaatcgtcccatgttcttttatgttcagatggga
caagaggagataagcgccagtggaacatcttatttaaataggactgaggctgctaacgtt
gaaaagattgtaaccactttcttaaggagtggtgtagtccctagtcagattggggtgata
acaccatatgaagggcaacgagcatatattgtgaactatatgtcaagaaatggtgctctc
aggcagcaactgtacaaggagattgaggttgcgagtgtagattcatttcagggaagggaa
aaagactacatcattctatcatgtgtgaggagtaatgaacatcagggaattggattcctt
aatgatcctcgtagactcaatgttgctttaacgcgtgctcgatatggtattgtcattctg
gggaatcctaaagtcctgagcaaacagccactgtggaatagcttattgacacactacaag
gagcatgaatgcttggttgaagggcctctgaataacttgaagcagagtatggttcaattt
cagaagcccaaaaagatctacaatgataggagacttttctttggcggtgcacctggagtt
gtggccaacgatgcttttggttctgctgcctcatctggcccaaatgctgatagaagaagc
attcgtggtaggggtacttttgtatctcctggccctcctaatggtacccataagcctggg
gtgcatcctgctgggtatccaatgcctcgggttccccttccaccatttcatggcagtccc
cattctcagccatatgctattccaactcgtggagctgtacatggaccagttggagctgtt
cctcacgtccctccaccaggaagtcgcggattcggggctgggcgtggcagtgctggtgct
cctattggcagtcatcttccacaccaccaaggcacccagcaagctattggaaatattggc
tctactttcaactttcctgctctggagaatccaaacagccagccatctgtgggtggtcca
ttgtctcaacctgggtttgttaataatatgccagttcaaggaccaagccaaacatttcgt
gatggattttcaatggcaggaatgtctcaggacttcttgggtgatgacttcaaaagccag
ggatcacatgttccttataatgttgctgacttctccactcaggcttctcaaagtggatat
ggggttgattatgtaacccaaggagcacaaggtgggtttccagggaactttctaaaccag
aattctcaagctggatactctcgctttggttcggggaatgatttcatgtctcaggactat
atgcctcatggatcacaaggtctatttactcaggttggcttcaatgacccttcacaagat
gatgcatcgcagagccactttggtgtggcaaattccaaccctcttcagtctcagggcctg
atgaattctctctactctcagccctttgcccactacaacacacagcctccactgaacttg
caggctccacagcagcagcctccacaggttcagagctcctctcaaaaccagaaaatccat
tataatggttga
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integrated database retrieval system
