Alnus glutinosa (common alder): 133856646
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Entry
133856646 CDS
T10577
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133856646
09123 Folding, sorting and degradation
03018 RNA degradation
133856646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133856646
03041 Spliceosome [BR:
aglu03041
]
133856646
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133856646
mRNA degradation factors
5'-3' decay
Lsm complex
133856646
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133856646
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
133856646
NCBI-ProteinID:
XP_062147690
LinkDB
All DBs
Position
14
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AA seq
88 aa
AA seq
DB search
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaacaatccttctcagctgctcccatcagagctaattgataggtgcataggg
tcgaagatatgggtaataatgaagggagacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaacatggtcctcgaagacgtcactgaatatgagattactgccgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgctattctcgtc
cctggtggttcgcccgatccagaatga
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