KEGG   Alnus glutinosa (common alder): 133856646
Entry
133856646         CDS       T10577                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03018  RNA degradation
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133856646
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133856646
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aglu03019]
    133856646
   03041 Spliceosome [BR:aglu03041]
    133856646
Messenger RNA biogenesis [BR:aglu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133856646
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133856646
Spliceosome [BR:aglu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133856646
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 133856646
NCBI-ProteinID: XP_062147690
LinkDB
Position
14
AA seq 88 aa
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccgccaacaatccttctcagctgctcccatcagagctaattgataggtgcataggg
tcgaagatatgggtaataatgaagggagacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaacatggtcctcgaagacgtcactgaatatgagattactgccgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgctattctcgtc
cctggtggttcgcccgatccagaatga

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