KEGG   Alnus glutinosa (common alder): 133856880
Entry
133856880         CDS       T10577                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133856880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aglu03019]
    133856880
Messenger RNA biogenesis [BR:aglu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     133856880
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_TEP1_C eIF2A Beta-prop_Vps41 WD40_RFWD3 Ge1_WD40 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR11_1st Cytochrom_D1 BBS2_Mid CFAP43_N Beta-prop_WDR75_2nd RMC1_N Beta-prop_ACSF4 Tricorn_2nd PD40 DUF5711
Other DBs
NCBI-GeneID: 133856880
NCBI-ProteinID: XP_062147908
LinkDB
Position
14:complement(1341850..1345072)
AA seq 321 aa
MKLAGLKSVENAHDESVWAATWVPATETRSALLLTGSLDETVRLWRSDELVLERTNTGHC
LGVASVAAHPSGLIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQLRFNPQGSTLAVA
GGGSASIKLWDTATWDLVATLPIPRLEGPKPSDKSGSKKFVLSVAWSPDGKRLACGSMDG
TISIFDVARSKFLHHLEGHFMPVRSLVYSPIEPRLLFTGSDDMHVHMYDADGKSLVGAMS
GHESWVLSVDVSPDGAALATGSSDRTVRLWDISMRAAVQTISNHTDQVWGVAFRPPGGSG
VRTGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagcttgcgggcctgaaatctgtcgagaacgcacacgacgagtctgtgtgggcagcg
acgtgggtgcctgcaaccgagactcgatcggcgctgctactgaccgggtcgctggacgag
acagtgaggctctggagatcagacgagctggtcctggagcgtacaaacacgggccactgc
ctgggagtggcgtcggtggcggctcacccgtcggggctaattgccgcctcggcttctctc
gacagcttcgttcgggtcttcgacgtcgacaccaacgccaccatcgccactctcgaagct
ccaccctctgaagtctggcaattgcgcttcaatccccagggttccaccctagcagttgct
ggtgggggtagtgcatcaatcaagctttgggacactgccacgtgggatttggttgccact
ctacctattcctcgcctagaaggtcccaagccctctgataaaagtggcagcaagaagttt
gtcctatcagttgcctggagtcctgatggtaaacgactcgcctgtggctcaatggatggg
accatctctatttttgatgttgctcgttccaaatttttacaccacctggaaggccacttc
atgcccgtgaggtctctggtgtactcccctattgaaccacggctactctttacgggctca
gatgatatgcatgtgcacatgtatgatgctgatgggaaatccctggttggagctatgtca
ggtcatgaaagctgggtattgagtgtggatgtaagcccagatggtgcagctcttgcaaca
ggctctagtgatagaactgtgaggctctgggatatttctatgagggcagctgtgcagacc
attagtaatcatacagaccaggtctggggagtggcatttcgaccaccaggggggagcggt
gtacggaccggtcggcttgctagtgtgtcagatgacaagagcatatcactgtacgattat
tcctga

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