Alnus glutinosa (common alder): 133856934
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Entry
133856934 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133856934
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133856934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133856934
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133856934
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
ARM_TT21_N
TPR_MalT
TPR_8
ARM_TT21_2nd
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
133856934
NCBI-ProteinID:
XP_062147976
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All DBs
Position
14:8537093..8555912
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AA seq
866 aa
AA seq
DB search
MDLRDSSSSSSSTAAANANRDGSLGTDDDAVLSVATALAKDAALHFQSSKFAECVEVLNQ
LLLKKEHDPKVLHNIAIAEYFREGCSDPKKLLEVLNSVKRRSEELASASGEQLEAVSNLG
HKVILGSKGNSTVAHQLSTANNSNIVYTDEFDTSVAILNVAVIWFHLHEYAKALSVLEPL
YQNIEPINETTALHICLLLLDVGLACSDASKSADVLVYVERAFGVSCVSQGDSGSMAQQQ
SSSLVTKSSSFPPSSSSATDASNSDLAASVNASENPLSRTLSDETLEYETMLSTLDIGGQ
HSARPSGLSSLNELSRTPVDRPFTTVDLKFKLQLYKVRFLLLTRNLKQAKREVKHVMNIA
RGKDSSALLLKSHIEYARGNYRKAIKLLVASSNRTDTAISSIFNNNLGCIYYQLGKYHTS
SIFFSKALTNTSSLRKDKPLKLSTFSQDNSFLIIYNCGVQYLACGKPILAARCFQKASLV
FYNRPLLWLRFAECCLMALEKGLIKTSLAPSERSEVRVHVVGQGKWRQLVMEDGISRNRH
VDSVERDDCTLSSDGQPKLSMSLARQCLHNALHLLNCSESNHSKSDSPSNSSMEENESSE
AASSRNSNHKHLHNIDLKAFTVTAGLSQVSSNGDAREPKGGGTTQELIQNSLSYYEDIRR
KENQLIKQAILANLAYVELELENPTKALPITKSLLELPECSRIYIFLGHVYAAEALCLLN
RPKEAAEHLSIYLSGGKNVELPFSQDDCEQWRVERSIDSEELNGGSVTAKNSPAEDSQGI
VFLKPEEARAALYANFAAVSAMEGELEQAHQFAMQALTILPNSPEATLTSIYVDLMLGKS
REALAKLKQCSHVRFLPSGVTFNKSS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcgagattcatcttcgtcatcgtcgtcgacggctgccgctaatgcgaatcgt
gacgggtccttgggcaccgacgacgacgccgtcttgtcggtcgcaaccgcgctcgccaag
gacgccgccttgcacttccaatcgagcaagttcgccgagtgcgtcgaggtcctgaaccag
ctcttgctcaagaaggaacacgatcccaaagttcttcacaatattgcaattgccgaatac
tttcgagaaggttgttcagatccaaagaagttgcttgaagtacttaatagtgttaagagg
agaagcgaggagctagctagtgcctcaggagaacagctggaggccgttagcaatcttggg
cataaagttattttggggtctaaaggaaatagtacagtggcacatcaactttctactgca
aataattccaatattgtttacacggatgaatttgacacttctgtggcaatcctaaacgtt
gcagttatctggttccatcttcacgaatatgcaaaggcattatctgttttggaacctttg
tatcaaaatattgaaccgataaatgagacaacagctctccatatttgcctcttgttgcta
gatgttgggcttgcttgcagtgatgcttcaaagtctgctgatgtattggtatatgtggaa
agagcttttggtgttagttgtgtgagccaaggtgacagtggaagcatggcacagcaacaa
tcttcaagcctagtcacaaaatcttcctcttttcctcctagcagttcatcagctacagat
gcttctaattcagatttagctgctagtgtgaatgcctcagaaaatcccttatcgagaact
ttatcggatgagacacttgaatatgaaacgatgttgtcaacactagatattggtggacag
cattcagcaaggccatctggtctttcatctttaaatgagctgtcgaggaccccagttgat
aggccttttaccactgttgatttgaagttcaagttgcagctttataaagttcggtttctg
cttctcactaggaacctcaaacaagcaaaaagagaagtcaagcatgttatgaacattgca
cgtgggaaagattcatctgctctcctcctgaagtctcatattgaatatgcacgaggcaac
taccgtaaagccatcaagctgttggtggcatcaagtaatcggacagacacggcaatttca
agcattttcaacaacaatcttgggtgcatttattatcagcttgggaagtaccatacatca
tcaatatttttttcgaaggcattaacaaatacttcatctcttcggaaggacaagccacta
aagctgtcaactttctcacaggataattcttttcttataatatataactgtggtgtacag
tacttggcctgtgggaaaccaatacttgccgctcgctgtttccagaaggccagtttggtt
ttctacaaccggcctctattatggctccgatttgctgaatgctgtctgatggctttagag
aagggactaataaaaacaagtctggctccatcagaaagatcagaagtcagagttcatgtt
gttgggcagggaaaatggaggcaacttgttatggaagatggcatatcaagaaacaggcat
gtagattctgttgaaagggatgattgtacgctgagcagtgatgggcaaccaaagctctca
atgtcgcttgcccgacagtgtttacataatgctctgcacttactgaactgctctgaatca
aatcattcgaagtctgattcgccctctaattcctccatggaggaaaatgaatcaagtgag
gcagcttcttccaggaactcaaaccacaagcacttgcacaatattgatttgaaagcattt
acagtaacagcaggcttaagtcaggttagttccaatggagatgcaagagaaccaaagggg
ggaggaacaactcaggagctcatacagaactctctctcgtattatgaagatattcgtaga
aaagaaaatcagttgataaagcaagctattcttgctaacctggcatatgtagagttggag
ctggaaaatcccacgaaggcccttccaatcaccaagtctctcttggagcttccagaatgt
tctagaatctacatctttcttggtcatgtgtatgcagcagaggcgctctgcctgttaaac
aggccaaaggaagctgctgagcatttgtccatttatttgtctgggggaaagaacgttgaa
ttgccgttcagccaagacgactgtgagcaatggcgagtggagaggagcatcgatagtgaa
gagttaaacggaggatcagtgactgccaagaattctcccgccgaggactcgcaaggtatt
gtgttcctcaagccggaagaggcgcgtgcagcactttatgcaaattttgctgccgtgtct
gccatggaaggtgaacttgagcaggcacaccaatttgcaatgcaagcactaaccatatta
cccaacagcccggaagcaactctgacttccatttatgtggatctcatgctcggtaagtcc
agagaagctcttgccaagttaaagcagtgtagtcacgtcaggttcctcccaagtggcgta
acattcaataaatcttcatga
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