Alnus glutinosa (common alder): 133856953
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Entry
133856953 CDS
T10577
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133856953
03015 mRNA surveillance pathway
133856953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133856953
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133856953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
133856953
NCBI-ProteinID:
XP_062148001
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All DBs
Position
14:complement(19886679..19902826)
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AA seq
413 aa
AA seq
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MAKPSRGRRSPPSGSVSISSSRSRSYTGSDSRSSSRSVSRSLSRSRSRSRSFSSSSSPSR
SVSSRSPSPPPLRKSPAEVAKRGRSPPPQSKRISPPPRKASPIQESLVLHVDKLSRNVNE
GHLKEIFGFFGEVVNVELAIDRTVNLPKGYGYVEFKARVDAEKAQLYMDGAQIDGNVIQA
RFTLPPRQKVSPPLKAMVNASKRDAPKIDGVSADGEKDGLKRQREVSPRRKPPASPRRRS
PVAQRGGSPRRQPDSPRRRADSPVRRRVESPYRRGDTPPRRRPTSPGRGPSPLRRNRSPA
RRMRGSPIRRRSPLPPRRRTPPRRARSPPRRSPIGRRRSRSPIRRPARSRSLSVSPRRGR
GPVLRRGRSSSYSKSPSPRKVARRSSRSPRRPLRGRSSSNSSRSSSPLPPRKP
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgaggccgtcggtcgccgccgtcggggtccgtgtcgatctcgtcc
tctcgctcccgttcctacacgggctcagactcccgctccagctctcgctccgtctctcgg
tcgctctcgcgttccagatctcgctcgaggtccttctcctcgtcttcctctccgtcgcgg
agcgtcagttctcgaagcccgagcccgcctcctttgaggaagagtcctgctgaggtagct
aaaagaggtcgctctccaccgccacaatcgaaaaggatttctccacctccaaggaaagct
tctcctattcaagagtcacttgttcttcacgttgacaaactcagcaggaatgtgaatgaa
ggccatttaaaagaaatattcggtttctttggcgaagttgtcaatgtggagctggcaatt
gatcgcacggtcaatcttccaaaaggatatggatatgtggagttcaaggcaagagtggat
gctgaaaaggcccaattatatatggatggtgcccaaattgatgggaatgttattcaagca
aggttcacattgcctccacgacagaaggtgtcaccacccctaaaagccatggtcaatgct
tcaaagagagatgctcccaaaattgatggcgtcagtgctgatggtgagaaggatggactc
aagcggcagagggaagtttctccacgtcggaagcctcctgcctcaccaagaaggagatcc
cctgttgctcaaaggggtggatctcctagacgacagccagattctcctcgtcgtcgtgca
gattctcctgtgcgtcgccgagtcgaatcaccttatcgacgtggtgatacacctccaagg
aggaggcccacatctcctggtagaggtccatctccacttaggcgcaatagatctcctgca
agaaggatgcgtggcagtcctattcgcagacgttccccacttcctccaagacgccgtaca
cctccaagacgagctcgtagtcctcctagaaggtctcctattggtcgtagacgtagtcga
tctcctattcgtaggcctgctcgctcacgttcactatcagtgtccccgcgcagaggtcga
ggaccagtcctgaggcgtgggaggtcatcatcctactctaaatcacctagtccacgcaag
gtagcccggagatcgagtcgtagtccgagaaggcctttgagaggaagaagcagtagcaac
agcagccgcagtagttcaccactgccacctcgtaagccatag
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