Alnus glutinosa (common alder): 133856979
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Entry
133856979 CDS
T10577
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133856979
Spliceosome [BR:
aglu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133856979
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_7
TPR_16
TPR_2
NRDE-2
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
133856979
NCBI-ProteinID:
XP_062148035
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All DBs
Position
14:complement(23265088..23278882)
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AA seq
864 aa
AA seq
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MEMIPAEDNMGVSCRVYYQVTICSSSMGDSETVVSETSAAMDYAPASYTSTGYADASSNV
VPNTDASPSEATGDFAASASLADANSTVPGGSDLGDGNVYGTEPNPVMQEAHVNTTFEPK
PPVSSEKVSDPESAAAKLSQVAGTNYSVNASVGEAGNLAVENGNASDNVGRAVDEQQFDG
FVPAMSADEDRLWNIVRANSLDFNAWTSLIEETEKVAQENILKIRKVYDAFLAEFPLCYG
YWKKYADHEAHLGSVDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERG
LTYVGTDYLSFALWDKYIEYEYMQQEWGRLAMIYTRILEYPNQQLDRYFNSFKELAASRP
LSELRTAEEAAAAAGALSEASVQANEGEVHPDAAEQSPKPVSAGLTEAEELQKYIAIREE
MYRKAKEVDSKIIGFETAIRRPYFHVRPLNVAELENWHSYLDFMEREGDFNKVVKLYERC
LIACANYPEYWIRYVLCMEASACLDLANNALARATQVFVKRQPEIHLFAARFKEQNGDIP
GARAAYQLVNAEISPGLIEAIIKHANMEHRLGNLEDACSLYEQAIAIEKGKEHSQTLPML
YAQYSRFLYMQVSGNAEKAREILVQALEHVQLSKPLLEALIHFEAIQTLPKRIDYLESLV
VKFIVSDLESSNVASPGDREELSCIFLEFLNVYGDVQSIKKAEDRHAKLFLPHRSTSELK
KRHAEDFLASDKTKMAKSYSVPSPAQSLMGAYPSAQNQWTAGYGVQPQAWPPVTQAQGQQ
WAPGYTQQAAYSAYSGYGSSYANPQIATAAPQTAAYGTYPSTYPAQQQAFPQQNYAAQPT
AAVTMAAPAQQPASVPQAYYGSYY
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgataccagctgaggataacatgggagtgtcttgcagggtatactaccaagta
acaatttgttcatcaagtatgggagacagtgaaacagtagtttctgaaacgtctgctgcg
atggactatgctcctgcaagctatacttccactggctacgctgatgccagctcaaatgtt
gttcccaatactgatgcttccccttccgaggctactggagattttgctgcttctgcttct
ctagctgatgcaaattcaactgttcccggtggttctgatttaggagatgggaatgtatat
ggcacagaacctaatcctgtcatgcaagaagctcatgtgaatacaacatttgaacctaag
ccacctgttagtagtgagaaagttagtgatccagaaagcgcagcagcaaagttgtctcaa
gtagctggtactaattattccgttaatgctagtgttggtgaagcgggaaatctggcagtt
gagaacggaaatgcttcagataatgtgggtagagctgttgatgagcaacagtttgatggt
tttgtaccagctatgtccgctgatgaagatcgactgtggaacattgtgagggctaattct
ttagattttaatgcatggacttccctgattgaagagactgagaaggtggcgcaggagaac
atattgaaaatacgaaaagtttatgacgcttttctggcagaatttcctttgtgttatggt
tattggaaaaagtatgcagaccatgaggcgcacctaggttcggttgataaagttgtggag
gtttatgaacgggcagttcaaggagtgacctattcggtggacatgtggttgcattattgc
atatttgccattagcacatatggagatccagacactgtccgaaggctctttgaacgagga
ttaacttatgttggaacagattacctgtctttcgccctttgggataaatatattgaatat
gaatacatgcagcaggaatggggccgccttgctatgatttacaccaggattttggagtat
ccaaatcaacagttggatcgatattttaacagcttcaaggagttagctgcaagtcgacct
ttgtctgaattaaggactgctgaagaagctgctgcagcagcaggtgcactttcagaggct
agtgtccaagcaaacgagggagaggttcatcctgatgctgcggaacaatctcctaaacct
gtaagtgctggcttaacagaagcagaggagttgcagaagtatatcgccattagagaagag
atgtataggaaagctaaagaggtcgattctaagatcattggttttgaaacagctattagg
aggccatactttcatgtgcggcccctcaacgttgcagagcttgaaaattggcatagctat
ttggattttatggaaagggaaggtgactttaacaaggtggtcaagttatatgagagatgc
ctgattgcttgtgccaattatcccgagtattggatacgttatgttttatgcatggaggct
agtgcttgcttggatcttgcaaataatgctcttgctcgggcaacccaagtctttgtcaag
agacaaccagagattcacctttttgctgctcggtttaaagaacaaaatggggatatacct
ggtgctagagctgcctatcaactagtaaatgctgaaatctcacctggtcttattgaagca
attattaagcatgctaatatggaacatcggctggggaatctggaagatgcttgttctttg
tatgaacaggcgattgcaattgaaaagggaaaagaacattcacagacattaccgatgttg
tatgcgcaatactctcggtttttgtacatgcaggtttctggtaatgcagaaaaagctagg
gaaattctagttcaagcacttgagcatgtgcaactttcaaaaccactgcttgaggcttta
atacattttgaggcaattcagaccttaccaaagcgaatcgattatttagagtctttggtt
gttaagttcatagtttctgacctggagagctccaatgttgctagtccgggtgatagggaa
gagttatcttgcatttttttggagtttctgaacgtctatggagatgtacaatctatcaag
aaggctgaggatcggcatgccaaacttttcttgccccatagaagcacctcagaattgaaa
aagcgccatgcagaggattttctagcatcagataaaacgaagatggccaagtcttattct
gttccttcacctgcccagtctttgatgggtgcatatccaagtgcgcaaaaccagtggaca
gctggttatggtgtacagcctcaagcttggccaccagttacgcaagcacagggacaacag
tgggcccctggctatacccaacaggctgcatacagtgcatatagtggttatggaagcagc
tacgctaatccgcaaatagcaacagcagcaccacaaactgccgcttatgggacttatcct
agtacatatcctgcacagcagcaggccttcccacaacaaaattacgcagcacaacccact
gcagcagtaacgatggcggccccagcccagcaacctgcttcagttcctcaggcatattat
gggagttactactga
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