Alnus glutinosa (common alder): 133857112
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Entry
133857112 CDS
T10577
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03030
DNA replication
aglu03420
Nucleotide excision repair
aglu03430
Mismatch repair
aglu03440
Homologous recombination
aglu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133857112
03420 Nucleotide excision repair
133857112
03430 Mismatch repair
133857112
03440 Homologous recombination
133857112
03460 Fanconi anemia pathway
133857112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aglu03000
]
133857112
03032 DNA replication proteins [BR:
aglu03032
]
133857112
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133857112
Transcription factors [BR:
aglu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133857112
DNA replication proteins [BR:
aglu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133857112
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133857112
MMR (mismatch excision repair)
133857112
DSBR (double strand breaks repair)
HR (homologous recombination)
133857112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
133857112
NCBI-ProteinID:
XP_062148228
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Position
14:1139484..1143245
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AA seq
624 aa
AA seq
DB search
MAVNLTPNAIAAIESGDVNAKPLVQVLDIKLIGSTQERYRLLLSDAVSTQHAMLATQLND
RVKSGRVRKGSVVQLVEYICSPVQNRKIIVVLNMETIIPDCEIIGNPKSLVESDSAAQKP
LFNGNLVQSARVSNNNFSAQKPGHNVQNFPPTVQPPYKPPPNYKNHGPILKNDAPARIIP
IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF
YDAIELGKVYMISKGSLKPAQKNYNHLKNEWEIFLEATSMVELCPDEDGSIPRQQFSFRP
ISEIENAENNSILDVIGVVISVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLWGEFC
NREGQKLEEMINSGGFPVLAVKSGKVNDFSGKSIGTISATQLLINPDLPEAHGLRNWFDG
VGKSASSVSISREIILGGSKNEIRKTVSQIKDEGFGRSDKPDWVTVKAAISFIKTDTFCY
TACPLMIGDRQCNKKVTRSGNARWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQE
SGEEILGCSAKELYSLKYEDQDDDRFGGIIRSRLFIQYLFRLKIKEEMYGDEQRVKITVV
KVDNVNYSSEGRYMLDLISKFPRQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgaacctgacgccgaacgcaattgcggcgatagagtccggcgacgtgaacgcg
aagccgctagtgcaggtgctggacatcaagctgatcgggagcacgcaggagcggtaccgg
ttgctcctctccgacgccgtttcgactcagcacgccatgctggcgactcagctcaacgac
cgggtcaagtccggccgggtccggaaaggctccgtcgtccagttggtcgagtacatttgc
agccccgtccagaaccgcaagataattgttgtgctgaacatggaaactataatcccagac
tgtgagataattgggaatccaaagtcactggttgaatctgattcagcagctcaaaaacca
ttgtttaatggcaatttagtgcagtcagcaagggttagcaataacaatttcagtgcccag
aaaccaggtcataacgtgcaaaatttcccaccaactgttcaacctccatacaaaccaccg
ccaaattacaaaaatcatggtccaattttgaagaatgatgcaccagcacgtataattccc
attgctgctttgaatccttatcaggggcgatgggctatcaaggctagagttactgcaaaa
ggcgatctccgtcgctataataatgcccggggagatgggaaggtgttctcttttgacctc
ctcgactctgatggtggagaaatacgtgtcacttgcttcaatgctgttgttgaccgcttc
tatgatgctattgagctcggtaaagtttatatgatctcaaagggtagcttaaaacctgct
cagaagaactataaccatctgaagaatgaatgggagatatttctcgaggcaacttcgatg
gtggagctttgcccagatgaagatggttctataccaaggcagcaattctccttcaggcct
atcagtgaaattgagaatgctgaaaacaattccatacttgatgttattggtgttgtgata
tctgtgaatccttcagtgcccattttgagaaagaatgggatggaaactcagagaagaatc
ctgaatctgaaggatggatctggcaggagtgttgagctaaccctctggggggagttctgc
aacagggaaggtcaaaagctggaagaaatgatcaactctgggggttttcctgttttagct
gtcaaatctgggaaggttaatgactttagtgggaaatcaatagggacaatttctgcgaca
cagctcctcataaatcctgatctgcctgaggctcatggtttgagaaactggtttgatgga
gttggaaaaagtgcttcttctgtatcaatttctagagaaattattctaggaggatctaag
aatgagatacgtaaaacagtgtctcagatcaaggatgagggttttggaagatcagataag
ccagattgggtaacagtgaaggcagccatatctttcattaagacagatactttctgttac
acagcctgcccattgatgattggagatagacagtgtaataagaaagtgacaaggtcagga
aatgcaagatggcaatgtgacaggtgcaatcaagagtttgaggagtgtgactatagatac
cttcttcaagcccaaattcaagaccatacaggattgacttgggtgacagctttccaggaa
tctggggaagagatcttaggttgctcggcaaaggagttgtattctttgaagtatgaagac
caggatgatgacaggtttggaggaataatccggagcagactcttcatccaatatcttttc
cggcttaaaatcaaagaggaaatgtatggtgatgaacaaagggttaagatcactgtagtt
aaggtggataatgtgaactattcttcagagggcagatacatgctagatctgatttcaaag
tttcctaggcaatga
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