Alnus glutinosa (common alder): 133857165
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Entry
133857165 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133857165 isoform X1
KO
K19026
spatacsin
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133857165
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133857165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
133857165
NCBI-ProteinID:
XP_062148292
LinkDB
All DBs
Position
14:18049973..18110343
Genome browser
AA seq
3220 aa
AA seq
DB search
MGLPLGGEGPAILQLQKWHPSQAQLNLSEFREAFISPTRQLLLLLSYQCEALLLPLITGD
SISSNDLEGRECTSGSVVDFDNDFSLESRSHSYTFLGDVNSLAWGICGDTYNQHKDTSFR
ELLFVSGSHGVTVHAFCEPNRGSAMARTAPEGDFGQGRWVEWGPSATLAQNMEVQEPSIL
CCEPPGNVVDVNTDNGTSEIPQNTSEVDDDLSRGVASKKWLQSFFVKAETIKSDDTVWTR
FPEKSSIPCSAEVVSFSLFNSNLPLLDFYYKGNSKSNKESRQETVLGSENYTFIKSNSAS
PVSNFKSDVLSNVFGFGVNDLYKCSRVFSSNSHHLIGFVLTLVDAVSVNTSDESESSRSN
NLLLVARLESWGIQWVSSVKLEESLNIGPVVEWADFRFSDNLLVCLNASGLIVFYAAMSG
DYVTCIDVLQTCELNPQSAFLEKEKISVGIHIKQVDEVREKSTDQCAGLFGRRMFKRLLV
DSHTSLLAVADEYGVIYVIHAGDYMPDKYYKSEKLLPHFQHLGLGMSVGGSDIGTQRVYS
SYSGHLKSNILSNMGGSFSFSDDIGSNVLTKIRDLSLQGKRNQYDLSLSGFSAASKTIDQ
RFHDSEVPSHSLRKIFLSMYRFNEDDCICFSPLGITRLIRKHHMKNQKGSQIVHFDLHAE
LAVRDDSCLNGYEMFFLQGRKEAFVGEAVGCTFGGWFYLVTEGGLSVVLPSISISSNFLP
VETIGYRQPIIGRGIGCQVRDTFEINESKQPCPPWKLEVLDRVLLYESPEEADRLCLENG
WDLKLSRMRRLQIELDYLKFDEIEGSLEKLVGVNLAEEGILRLLFAAVYLMLCKSASDNE
VSAASRLLALATCFATKMIRRYGLLQHREDAYILQGFSRTHILSLPPVRPEKVEKDQGNS
RRLSEMAHFLEVVRNLQYQLSSKFKRPGQGSVDGREASSLVDMDLTQDECHLSSLSTDGA
SLETSNQLEIYFPVSSGSITAENLALMPVDAESHLDTEDLSEVSALVLQGRVLEKQILPL
ENPKEMIARWRLDNLDLKTVVKDALLSGRLPLAVLQLHLHHSSGLVDDKEPVDSFTEVRD
IGRAIAYDLFLKGETGLAVATLQRLGEDIETNLRQLLFGTVRRSLRAEIAVEMKKCGYLG
PYEWKILDRISIIERLYPSSSFWKTFLGRQKEFVRTSSSSNSPGGLYLHLLHSHLFDNLI
IECGEIDGVVLGSWTNVNLGSSVPAVDEDTAHAGYWAAAAIWSNAWDQRTIDRILLDQSF
LMGVNVLWESQLEYHVCRNDWEEVSKLLDLVPTSILSDGNLQVSLDSLQPASTVGYNREP
ADYGNYLCSLEELDAVCMDIPDVKIFRFSANIMCSIWLRLLMEEKLARKFIFMKEYWEGT
AEIAHLLARSGFITSGYKSPFEDDHIKSSSNLKFSDSSGPSHVDTVKALHKLFVHHCAQN
YLPNLLDLYLDHHKLVLDNESLCSLQEAAGDCQWARWLLLSRVRGREYDASLSNARSIMS
RNLVPGSNLSILEIDEIIHTVDDIAEGGGEMAALATLMYAPAPIQSCLSSGSVNRYSSSS
AQCTLENLRPTLQRFPTLWRTLVAACFGEDATCNVVNLKAKTALSDYLKWRENIFFSAGH
DTSLPQMLPCWFPKAVRRLIQLYVQGPLGWQSLSGLPIGESLLDRDTDFFINADENAEVS
AISWEATIQKHIEEELYDSSLEETGLGLEHHLHRGRALAAFNHLLAARVQKLKSEEQVGA
SVLGQSNVQSDVQTLLAPLTQSEESLLASVMPLAVMHFEDFVLVASCAFLMELCGLSASM
LGIDIAALRRISSFYKSLKTNENLRQLSPKGSAFHAISHESDIAESLARALADDYLHQDG
ATITKPKGTPNSFTSKRPSRALMLVLQHLEKASLPMVVDGNTCGSWLLSGNGNGTELRSQ
QKAASQHWNLVTVFCQMHQLPLSTKYLAVLARDNDWVGFLSEAQVGGYPYDTVVQVVLKE
FGDPRLRIHIFTVLKGMQSRKKASPSSSSDTTDKGGETLFSDDNICIPVELFRILAECEK
QKNPGEALLLKAKDMSWSILAMVASCFPDVSPLSCLTVWLEITAARETSSIKVNDIASQI
ADHVGAAVEAINSLPAGDRALTFHYNRCNPKRRRIMEPKSVDPVAASTSELSSTSLSAKI
FVAQGIIAEEERKAQLGQHIKVSSDFDEGPVSLSKMVAVLCEQHLFLPLLRAFEMFLPSC
SLLPFIRALQAFSQMRLSEASAHLGSFSSRIKEEPAYLLANIGREGQVGTSWISSTAIKA
ADAMLSTCPSPYEKRCLLQLLAATDFGDGGCAATYYRRLYWKINLAEPSLRKDDGLHLGT
ETLDDASLLTALKENGHWEQARNWAKQLEASGGSWKSSVHHVTETQAESMVAEWKEFLWD
VPEERIALWGHCQTLFIRYSFPALQAGLFFLKHAEAVEKDLPARELHELLLLSLQWLSGM
ITMSNPVYPLHHLREIETKVWLLAVESEAQVKSEGDFNLTSSTRDAVIKNSSSIIDRTAS
MITKMDNHMNTMRSRTLEKNDVRENNLTHHKNQVLDSSFPTTAGGSTKTKRRAKGYMPLR
RPLIDSVDKNIDPDDGFGPLKFGNDLPLQEENIKMEMSFSTWEERVGPAELERAVLSLLE
FGQIMAAKQLQHKLSPAQVPSEFVLVDAALKLATNSTPSCEASISMLDEEVRSVIKSYNI
PTDQHKVNTLQVLESLASILTEGSGHGLCKRIIAVLKAANVLGLSFSEAFDKQPIELLQL
LSLKAQESFEEANLLVQTHSMPATSIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLW
RFSDFLKWAELCPSEPEIGHALMRLVITGQEIPHACEVELLILSHHFYKLSACLDGVDVL
VALAATRVEAYVSEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLLQKYSAAADTN
TGVADAVRGFRMAVLTSLKQFNPNDLDALAMVYNHFDMKHETAALLESRAEQSSEQWFHR
YDRDQNEDLLDSMRYYIEAAEVHSSIDAGNKTRKACAQASLVSLQIRMPDLQWLYRSETN
ARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPELLEEFVAEFVAVLPLQPSM
LADLARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLWRSFRCLLKRTRDLRLRLQLAT
VATGFGDVLDAGMKALDKVPDNAGPLVLRKGHGGAYLPLM
NT seq
9663 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacctttgggtggtgagggtcctgctatactgcagttgcaaaaatggcacccc
tctcaggcccaactgaacctgtcggaatttcgtgaagctttcatttctcctacaagacag
ctattgttattgctttcgtatcagtgtgaagctctgttgcttccgcttattactggggac
tctataagtagtaatgatttggaaggtagggaatgcacatctgggtccgttgtggatttt
gataatgatttttctcttgaatcaagatctcatagttatacttttcttggtgatgtaaac
tcactggcttggggtatctgtggtgatacctataatcagcacaaggatacttcatttaga
gaacttctatttgtatctggcagccatggtgttacggtccatgctttttgtgaacccaat
agaggcagtgcaatggctagaactgcaccagagggtgactttgggcaagggaggtgggtg
gaatgggggccttctgctacactagctcaaaatatggaagtgcaggaaccttccatcttg
tgttgtgaaccccctggaaatgttgtagatgtaaacacagacaatggaactagtgaaatt
ccacaaaatacttctgaagtagatgatgatttgtcaagaggagttgcttctaagaaatgg
ttgcaatcttttttcgttaaagctgaaactatcaaatctgatgataccgtatggaccagg
ttcccagaaaaatcatcaattccttgctctgcagaggttgtttcattcagccttttcaat
agtaacttaccacttctcgacttctattacaaaggaaactccaaatcaaataaggagagc
cggcaggaaacagttcttggttcagagaattatacatttatcaagtcgaattctgcatca
cctgtttcaaattttaagtctgatgttttgtccaatgtttttggttttggagtgaatgat
ttatacaagtgctccagggtgttctctagcaattcacatcacttaattggattcgtttta
acattggtggatgctgtttctgttaatactagtgatgaaagtgaaagtagcaggagcaac
aatttacttcttgttgcaaggttagagagttggggaatccagtgggtttcctcagtaaag
cttgaagaaagtctaaacataggtccagtggttgagtgggctgacttccgcttttctgat
aaccttcttgtttgtcttaatgcatctggcttaatcgttttttatgctgcaatgtctggt
gattatgttacatgtatagatgttttacaaacatgtgaacttaatcctcaatcagctttc
ctggagaaagaaaagatttctgtaggaatacatattaaacaagttgatgaagttcgtgag
aagtcaactgatcaatgtgctggtttatttggtagaagaatgtttaaaaggttgcttgtt
gattcacatacttctctcttagcggttgctgatgaatatggtgtaatatatgtaattcat
gctggagactatatgccagacaagtattataaatctgagaaattgcttccacattttcag
catttgggacttggtatgtcagttggtggttctgatattggcacccaaagggtgtattct
agttattctggccatcttaaatctaatattttatccaatatgggcgggagtttttccttt
tcagatgatattggaagtaatgtacttacaaaaatccgagacttgagccttcaaggaaag
aggaaccagtacgacttaagtttaagtggcttttctgctgcttcgaagacgatagatcag
aggtttcatgattctgaagtaccatcacacagtttgcgaaaaatctttctgtccatgtat
agatttaatgaggatgattgtatctgtttttctcctctaggaattactcggctcattaga
aaacaccatatgaagaatcaaaagggttctcaaattgttcattttgacctgcatgcagag
ttggcagttcgtgatgacagctgcctgaatgggtatgaaatgttttttctacaaggtaga
aaggaagcatttgttggagaagcagttggttgcacatttggaggatggttttatttggtg
acagaaggtggtctttcagtggttcttccctctatttcaatttcatctaatttccttcct
gttgagaccattggatatcggcagccaattatcggtagaggcattggatgtcaagttaga
gacacattcgaaattaatgaatcaaaacagccctgcccaccgtggaaacttgaagttttg
gacagagttcttttgtatgaaagtcctgaagaggcagatcgtttatgtttggaaaatggg
tgggacctaaaactttcgcggatgcgtcggttgcaaatagagttggactacttgaaattt
gatgaaatagagggatctctagaaaagcttgtgggtgtaaatctcgctgaagagggaatt
ttaagattgctctttgctgcagtttatctgatgctctgtaaatctgccagtgataatgag
gtttctgctgcatcaaggcttcttgcattggccacatgctttgcgaccaaaatgattcgt
agatatggattactacagcacagggaagatgcttacatattgcagggctttagtaggact
cacatactttctcttccaccagttagaccagagaaagtagaaaaagatcagggaaattca
agaaggcttagtgagatggctcactttctagaggttgttcgaaatctgcaatatcaactt
agttcaaaattcaagaggcctggccaaggatcggtggatggtagggaagcatcaagtttg
gtggatatggatttaacccaagatgaatgtcatctttctagtctttctacagatggtgca
tcattagagacctcaaaccaacttgaaatttattttcctgtgtcctcaggctccatcact
gctgagaaccttgctttgatgcctgtggatgctgaatcccatttggacacagaggattta
agtgaagtatctgctcttgtgctgcaagggagagtgctggaaaagcaaattctcccctta
gaaaatcccaaggagatgattgctcgttggaggctagataatctggacctaaaaactgtg
gtcaaagatgcgttactctctggtcgtctccctttagcagttcttcaactgcatcttcat
cattcgagtggtttagtcgatgacaaagagcctgttgattctttcactgaagttcgtgac
attggaagagctattgcttatgacctatttttgaagggtgaaactggacttgctgtagct
acgctgcaaaggcttggagaggacattgaaaccaacctcaggcagttattgtttggcacc
gtaagaagatcccttcgagcagaaattgctgtggagatgaaaaaatgtggttacttggga
ccatatgaatggaagatattggataggatatcaatcattgagaggctctacccaagcagt
agtttctggaaaacctttcttggccgacagaaagaattcgtgagaacttcatcaagttca
aattcaccagggggactttatctgcaccttttgcattcacatttgttcgacaatctgata
attgagtgtggtgagattgatggagttgttttaggttcatggacaaatgtcaatctgggc
tcttctgttcctgcggttgatgaagatactgctcatgctggatactgggctgctgctgct
atctggtcaaatgcttgggatcaaagaaccattgatcgtatactactggatcaatctttt
cttatgggtgttaatgtattatgggaatctcaacttgagtaccatgtatgccgtaatgac
tgggaagaagtctctaaactcctggacctggttcctacatctattttatcagatggaaac
ctccaagtcagtttagacagtttgcagcctgcttcaactgttgggtacaatagggagcct
gctgattatggcaattacttatgctctcttgaagaactagatgctgtgtgcatggacatc
ccagatgtcaaaattttcaggttttcagccaatataatgtgctccatctggttaaggttg
cttatggaggagaagctcgcaaggaagttcatttttatgaaggaatactgggaaggcaca
gcagagatagcacatcttctggcccgttcaggcttcatcactagcggatacaaatctcct
tttgaggatgatcacatcaagagttcatcaaatctaaaattctcagatagtagtggacca
tctcatgttgacactgtgaaagctttgcataaattatttgtacatcactgtgctcaaaac
tacttgccaaaccttctggacctttatcttgaccatcacaagctggttctagataatgag
tcactttgttcattacaggaagctgcaggagattgtcaatgggcaagatggttgctctta
tcaagagttagggggcgtgaatatgatgcctcgctttctaatgctcgttccataatgtca
cgtaatttagttcctggaagtaacctcagcattctagagatagacgaaataattcatact
gttgatgacattgctgaaggagggggggagatggcagctctagcaaccctaatgtatgcc
ccggcaccaattcaaagttgtctgagttctggtagtgtaaaccggtatagtagttcttct
gcccagtgcaccttggagaatcttagaccgacccttcagcggttccctacattgtggcgt
acacttgtagctgcatgttttggagaagatgcaacttgcaacgttgtgaacctcaaagca
aaaactgctttatctgactatctaaaatggcgtgagaacatcttcttctctgctggacat
gatacttcacttccacaaatgctgccatgctggtttcctaaggctgtgagaagattgatt
cagctttatgtccagggtcctcttggatggcaatcactttcaggtctgcctataggagaa
tctctgctagatagagacactgattttttcataaatgctgatgaaaatgctgaggtcagt
gcaatctcctgggaagcaaccatccaaaagcacattgaagaggagctctatgattcttca
cttgaggaaactggacttggacttgagcatcacttgcatcgtgggcgtgcactggcagct
ttcaaccatcttcttgctgctagagttcaaaaattgaaatcagaagagcaagttggtgct
tcagtacttggacaaagtaatgtccaatcagatgtgcaaacacttcttgcacctttaaca
caaagtgaagagtctcttcttgcatctgtcatgccccttgctgttatgcattttgaggat
tttgtgttggtggcttcatgtgcttttctcatggagctttgtgggttatctgccagcatg
cttggcatagacattgccgccttgagacggatatcttccttttacaagtccttaaaaacc
aatgagaatcttagacaactttcaccaaagggttctgcatttcatgcaatatctcatgaa
agtgatatagcggagtctcttgctcgagctctggccgatgactatctgcaccaggatggt
gctaccattactaagccaaagggaactccaaattcatttactagcaaacgtccttcacga
gctctcatgcttgtcctacagcatttggaaaaggctagtctgccaatggtggtggatgga
aatacatgtgggtcttggctattaagtggcaatgggaatggaactgagttaagatctcaa
cagaaagctgcgagccagcattggaatttagttacagttttttgtcagatgcatcagctt
cccttgagcacgaaataccttgctgtattagcaagagacaatgactgggttgggttttta
tctgaagcccaggttggaggatacccttatgacactgtcgttcaagtagtgttgaaggag
tttggtgatccacgtctccgaattcacatattcacagttttgaaaggcatgcagtcaagg
aaaaaagctagcccttcatcatcttcagatactacagacaaagggggtgaaactctcttt
tctgacgacaacatatgtatcccagttgaactctttagaattttagccgagtgtgagaag
cagaaaaatcctggagaggcccttttgttgaaagcaaaggacatgtcctggtctattttg
gccatggttgcatcttgctttcctgatgtttctccattatcctgcttaactgtttggctg
gaaattactgcagcaagggaaacgtcatccattaaggtgaatgatattgcgtcccagatt
gcagatcatgttggagcagccgtggaagccattaattccctgccagcaggtgatagagcc
cttacatttcattacaaccggtgtaatccaaaacgcaggcggattatggagcccaaatca
gttgatccagtggctgcctcaacatcggagctttcaagtacttctttgagtgcaaaaata
tttgttgcccaaggcattattgctgaagaggaaagaaaagcgcaacttggtcaacatatc
aaagtttctagtgattttgatgaagggcctgtttctctttccaagatggtcgcagtgcta
tgcgaacaacacttgttcctgccattgctaagggcgtttgaaatgttccttccgtcatgt
tcgctgctacctttcatccgtgctcttcaggcattttcacaaatgcgcctttctgaagct
tcagcacatttgggttctttttcttcccgaattaaggaagaacctgcctatctactggca
aatataggaagagaagggcaggttgggacttcatggattagctccactgccataaaagct
gctgatgctatgctttcaacttgtccatctccttatgagaaaagatgcttactacaactt
cttgctgctactgactttggtgacgggggatgcgcggcaacatactatcgacgactttat
tggaaaattaatttagcagagccttcattacgcaaagatgatggtctacaccttgggacc
gagactttagatgatgcttcacttttaacagcactaaaagagaatgggcattgggagcaa
gcacgcaactgggccaagcagttggaggccagtgggggatcttggaaatcttctgttcat
catgttactgaaacccaggctgaatctatggtagccgaatggaaggagtttctttgggat
gtcccagaagagagaattgctttatggggccactgccagacgctgttcattagatattcc
ttccctgctttacaggctggattattttttcttaaacatgcagaagctgtggagaaagat
ctccctgcgagggagcttcatgaattattgttgctttctctacaatggttgagtgggatg
ataaccatgtccaatccagtctatccattgcatcatctgcgggaaattgagactaaagta
tggctcttggctgtagaatcagaagctcaggtgaagagtgaaggagacttcaatttaacc
agttccactcgggacgctgttattaaaaatagctccagtattattgaccggactgcgagt
atgataactaaaatggacaatcatatgaatacaatgcggagtagaactctggagaaaaat
gatgtaagggaaaataacctgacacatcacaagaaccaagtattggattccagctttcca
accacagcagggggaagtacaaagacaaaacggagggccaaaggctacatgccactaaga
cggccattaatagactcggtggataaaaacattgatcctgacgatggatttggtcctctt
aaatttggtaatgacttgccgttgcaagaagagaacattaaaatggaaatgtccttttcg
acgtgggaggaaagggttggacctgcagagctggaaagagcagttctttctttattggag
tttggacaaataatggctgccaagcaactccaacataagctgtctccggcacaagtacct
tctgaatttgtacttgtggatgctgctttaaagcttgccactaactcaactcctagttgt
gaagcatccatatcaatgcttgatgaggaagtgcgttctgttattaagtcatataatatt
cctactgaccagcataaggtcaacacgctgcaggttttggagagtttggcgtccatttta
actgaaggtagtggacatggactatgtaagagaataatagcagttctgaaagctgcgaat
gtcttggggctttcattttcagaggcatttgataagcaaccaattgaattactacagctt
ctttctcttaaagcacaagagtcatttgaggaggcaaatctcctagtgcaaacacattct
atgccagccacgagtattgcccagattctcgcagaatcatttctgaagggcctattagct
gcacatcgtgggggatatatggattctcaaaaggaggaagggcctgcccccttactgtgg
agattttcagacttcctgaagtgggcagagctctgtccttccgaaccagaaattggccat
gcattgatgcgtttggtgattactggacaagagataccgcatgcttgtgaggttgagctt
cttatcctgtctcaccacttctacaaattgtcagcttgccttgatggagttgatgttctt
gtagcccttgctgctaccagggttgaagcttatgtatccgagggtgatttttcgtgtttg
gctcgcctgataactggagttggaaacttccatgccctcaatttcattcttggaattctt
atagaaaatggtcaactggatcttcttcttcagaaatattcagctgctgcagatacaaac
acgggcgtagctgatgctgtcaggggatttcgaatggctgttttgacatcattgaagcag
ttcaaccccaatgaccttgatgcgcttgcgatggtctacaaccattttgatatgaagcat
gaaacagctgctcttttagagtcacgggcagagcagtcttccgagcagtggttccaccgt
tatgacagggatcaaaatgaagatctgttagattccatgcgttattacattgaagctgct
gaagttcattcttccattgacgctggcaacaaaacacgcaaagcatgtgctcaggcttcc
cttgtgtccctccaaattcgaatgccagatctccagtggctttatcgatctgaaaccaat
gccagacgagccctagttgagcagtcccgttttcaagaggcactaattgttgctgaagca
tatggtcttaaccagccaagcgagtgggctttggttctctggaatcagatgctcaaaccc
gaactattggaagagttcgtagctgaatttgtggctgtgcttcctctccagccctcgatg
cttgccgatcttgcaagattttatagggcagaggttgcagccagaggagaccagtcccaa
ttctccgtttggctaactggaggaggattgcctgccgaatgggctaaatatctgtggaga
tcgtttaggtgcttgttgaagagaactagggatttgaggttgcggttgcagttggctact
gtggcaactggatttggcgatgtgcttgatgcaggcatgaaggcattggacaaagtccct
gacaatgcggggccacttgtgctgaggaaagggcatggtggggcttacctcccattgatg
tga
DBGET
integrated database retrieval system
