Alnus glutinosa (common alder): 133857210
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Entry
133857210 CDS
T10577
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
133857210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aglu03036
]
133857210
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133857210
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
133857210
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
133857210
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
133857210
NCBI-ProteinID:
XP_062148373
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All DBs
Position
14:23903482..23910685
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AA seq
1225 aa
AA seq
DB search
MAEDEDRVLLNSLGITSANPEDIERDILAEAIRNGENGSEVGGSAEEEPLEKSESIDPPS
ASQAKLYHKLRVVEFEIDAVASTVEQARNVASDGNDRGELGNHEDGGQVSPNDLNLQHAL
AADRLRSLKKTKAQLDKELSDLRKGDSSKGVDHGKVLRDLVKGEPKRKRKLKEVQKSWKH
VEKRQKIVSFEEDTGFDAILDAASAGFVETERDEFIRKGILTPFHKLKGFERRLQRPGSF
NRLDVPEKEDDSNDLVAASVARVVRSMSEAAKARPTTKLFDPEALPKLDAPTRPFHRIKT
PLQFPRSPERELEKNDTSKRKKKNKRPLPGRKWTKLISCEEKHLEESEDARDKVVSSSCE
DEKPEGVKDVDDYEPPFVTLEGGLKIPESIFCALFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWCPSFHVVILHDSAQDT
INRKKRAKSNDSDYESEASFDSEYEGDISSRSSGKWDSLINRVLRSESGLLITTYEQLRI
LGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFD
FVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV
NADLPKKTEHVLFCSLTAEQRSVYRAFLASTEVEQILDGNRNSLYGIDVMRKICNHPDLL
EREHSGHNPDYGNPERSGKMKVVDQVLKVWKEQGHRVLLFSQTQQMLDILEKFLITAGYS
YRRMDGLTPIKQRMALMDEFNNSNDVFIFILTTKVGGLGTNLTGADRVIIYDPDWNPSTD
MQARERAWRIGQKRDVTVYRLITSGAIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDM
KDLFVLNDDRESGSTETSNIFGQLSEDVNVVGAQKDKQDKQKSLEVSARHADGVAAENDN
KSGIATSSGKGKEKADRSDGDGDEETNILRSLFGAHGIHSAMNHDVIMNAHDGEKMRLEE
QASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPSSMRQKFGSTVNSQLTNNTK
SLNGLSSNGTSSINGIAAGASAGKALSSAELLARIRSSQERAVGAGLEQQLASSSRNEAR
STDVGPSRPSKNKARVQPEVLIRQICTFIQQKGGSTTSGSIVQHFKERIPAEDLPLFKNL
LKEIATLEKILNESHWVLKPEYLQK
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgaggatagagttctgcttaatagtttgggtataacctccgcgaatcct
gaggatatcgagcgtgacatactagcagaggcaataaggaatggtgagaatggtagtgaa
gttggagggagcgcggaggaggaacctcttgagaagtcggaaagtattgacccgccatcc
gccagccaagcaaaactctaccataaattgagggtagtagagtttgaaatagatgccgtt
gcctccactgtcgagcaggcaaggaatgttgcaagtgacggtaatgaccgtggggaactt
ggaaatcatgaggatggtggtcaggtttcccctaatgacttaaaccttcagcatgccttg
gctgctgatcggcttagaagcctcaagaaaaccaaggctcaacttgacaaggaactttca
gatttgcgcaagggtgactcttccaaaggtgttgaccatggcaaggtgttacgagatctg
gtcaagggagagccaaaacgcaagaggaagttaaaagaggttcaaaaatcatggaaacat
gtagaaaagagacagaaaatagtctcatttgaggaggatactggttttgatgcaattttg
gatgcagcatctgcaggctttgttgaaacagaaagggatgaattcattcggaaaggaatt
ttaaccccttttcataagctgaagggctttgagcgccgtcttcaacgaccagggtcattt
aataggctcgatgtacctgagaaagaagatgacagtaatgatcttgttgctgcaagtgtt
gccagagttgtacggtcaatgtcggaggctgctaaagctcgcccaacaaccaagctcttt
gatccagaagctttgccaaagcttgatgcacccactcgtccttttcataggataaaaaca
cctttacaatttcctcgatccccagaaagagagctagaaaagaatgatacttcaaaaaga
aaaaagaaaaacaaacggcctttgcctggcaggaagtggacaaagctcatttcttgtgag
gaaaaacacttggaagaaagtgaggatgcaagggacaaagtagtaagctccagttgtgaa
gatgagaagccagagggtgttaaagacgtggatgattatgaacctccttttgtaacactt
gaaggtgggctgaaaataccagaaagcatcttttgcgcactttttgactatcaaaaagtg
ggagtacagtggttgtgggaattgcattgccaaagagcaggtggtattattggagatgag
atgggtcttggtaagacaatccaagtcttatcttttcttggtgcgctgcatttcagtaat
atgtacaaaccgagcattgttgtctgccccgttacactcttgcgacagtggaaaagggaa
gcacaaaaatggtgcccaagctttcatgtggtgatactacatgattctgctcaggatact
attaataggaagaagcgagccaaatcaaatgatagtgattacgaaagcgaagcttcattt
gacagtgaatatgagggagacatctcgtctaggagcagtggaaaatgggattccttgata
aaccgtgttttgagatcggaatctgggttgcttatcaccacttatgagcaactgcgcata
ttaggtgaaaaattgcttgatattgaatggggttatgcagttctggatgaaggacaccga
attcggaatcctaatgcggagattactctagtttgcaagcagctacagacagttcatcga
ataataatgactggtgctccaattcagaacaaactggctgaactgtggtctttatttgat
tttgttttccctgggaagctgggtgtcttgcctgtatttgaggcagagtttgcagtcccc
atatctgttggtggttatgctaatgcttcaccattgcaagtatccacagcttacaggtgt
gctgtggtcctgcgggacttgatcatgccttatctcctacgacgtatgaaggctgatgtg
aatgccgatcttccaaagaagaccgaacatgtcctcttttgcagcctcactgcagagcaa
cgatctgtgtatagagcttttctagctagcactgaggtggaacagattttagatggcaat
agaaattctctttatggaattgatgtgatgcgtaagatttgcaaccaccctgatctgctt
gagagggagcattccggccacaatccagactatgggaatccagaacgcagtggaaaaatg
aaagttgttgaccaagtgcttaaggtttggaaggaacaaggccatcgtgttcttctgttt
tcacaaactcaacaaatgcttgatattcttgagaagtttttgattaccgctggctacagc
tacaggagaatggatggtcttactcccataaaacaaagaatggccttgatggatgaattt
aataactcaaatgatgtatttatcttcattttaacgaccaaggttggtggtttgggaaca
aatctaactggtgcagaccgggtgatcatctatgatcctgactggaacccttcaactgac
atgcaggccagggagcgtgcttggcgtattggtcagaaacgggacgtaacagtgtataga
ttgatcacaagtggagccatagaggagaaggtgtaccaccggcagatttacaaacatttt
ctcactaataagattttgaagaacccacagcagagaaggttctttaaagctcgagatatg
aaggatctttttgtcctgaatgacgacagagagagtgggtcaactgaaacatctaatatt
tttggtcaactttctgaagatgtaaacgttgttggggctcagaaagataaacaggataag
caaaaatctcttgaagtttctgcacgacatgctgacggtgttgcagctgaaaatgataac
aaatcagggattgcaacttcgagtgggaaaggaaaagaaaaagctgatcgcagtgatggt
gatggtgatgaagaaacaaacattttaaggagtctttttggcgcccatgggatacatagt
gccatgaaccatgatgtaatcatgaacgcccatgatggggagaagatgaggcttgaggag
caagcttcccaagttgcacaaagagcagcagaagcattgcgccagtcacggatgctccgt
agtcgtgacagtatttctgtcccaacatggaccgggaaatccgggactgctggtgcgcca
tcatctatgcgtcagaagttcggttcaactgtgaactctcagttgacaaataatactaaa
tcactaaatggattgtccagcaatggaaccagcagtataaatggaattgcagctggggca
tccgctgggaaggcactatcttcagctgaactattagctagaatacgaagtagccaagaa
agagctgttggtgctggacttgaacaacagctggcttcaagttctcgtaacgaggcaaga
tctaccgatgttgggccttccagaccatcgaagaacaaagctagagtgcagcctgaagta
ttgatacgtcagatctgtacatttatacaacaaaaaggtggaagtaccacttcaggcagc
attgtgcagcacttcaaagagaggatacctgccgaggatctacccttgtttaagaatctt
ttgaaggaaatagcaacactagagaaaatcctgaatgaatcgcattgggttctaaaacca
gagtatctacagaaataa
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