Alnus glutinosa (common alder): 133859395
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Entry
133859395 CDS
T10577
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
133859395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133859395
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
133859395
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
133859395
NCBI-ProteinID:
XP_062150774
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Position
2:complement(30812420..30826761)
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AA seq
994 aa
AA seq
DB search
MRTRDGSKRPKQSSGMKNAKKALHDSDSRSRSELLNDSGTLADISQEAVGRLLRRANNRN
SSGKKKRDNNPRQHDSIGTPESGQKKNDKLDVDPGAILSTSKAEGCGRDAIGKTAGEERF
DRGSLQNTLSENREELNDSDWEDGSIPNLDSTDNLPVTIEFSETANSDRRKPVRRSSAED
KELAELVHKVHLLCLLARGRLIDRACDDPLIQASLFSLLPTHLLNISKSTHLTANALHPL
LLWFQNNFRVRSPTSAERSFDLALAFALETREGTPEEIVALSVALFRALNLTTRFVSILD
VSSLKPDADESETFSQDASRSSKGIFKTSTPMVARPQQDSVSPIKSFSCNERGNICETSH
RGSCKSMDRCSTSNITQSKDSPVISELDDKMSDSLACEAGHGISETCLTKKSKRPKRKGD
LEFEMQLELALSATTVVTGESKIEPIARDLNSNSLNFSSPLKRMKRIVSEESPTSSQAIS
TAVGSRKVGSPLYWAEVYCNGENLTGKWVHVDVVNAVIDGEQKVEAMSAACKTSLRYVVA
FAGQGAKDVTRRYCLKWYKIASRRVNSFWWDAVLARLKELEAGATGGMVHMEKQQIEAST
EHEKVKASRKLDNPTLDDVPGNAIFGKSSLEISKEYGKKIGVESSLSNSFVATRSALEDM
ELETRALTEPLPTNQQAYKNHQLYCIERWLTKYQILHPKGPILGFCSGHPVYPRNCVQTL
KTKERWLREGLQIKANELPVKELKRSIKLQKVQVPEDDECGGVNYEGTIELYGKWQLEPL
HLPRAVNGIVPKNERGQVEVWSEKCLPPGTVHLRLPRVFSVAKRLEIDYAPAMVGFEFRN
GHSHPVFDGIVVCAEFKDAILEAYAEEEERREAEEKKRNETQATCRWYQLLCSIVTRQRL
NNRYGDSLSSQTSTDIHDMNKKLNASVGGCQEDKQSIVCQQQEDIHQAKVDAPSAALPEE
HKHVFLTEDQIFDEESLVMIKRCHCGFSVQVEEL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacaagggacgggtccaagcgaccgaaacaatcttcaggtatgaaaaatgcaaag
aaagctcttcatgattcagatagcagaagccgttccgagttgctcaatgacagtggaact
cttgctgacatatcacaggaggctgttggcagacttctaagacgtgccaataaccgcaac
tcttctgggaaaaagaaacgtgataataaccccagacaacatgattcaattggcacacca
gagagtgggcaaaaaaaaaatgacaaactagatgtggatccaggagccatattgagtact
tcaaaggctgaaggttgcggtagagatgcaattggaaagactgcaggggaagagagattt
gacaggggaagtttacagaatactctttcagaaaatagggaagaattgaatgactcagat
tgggaagatggttcaattcctaatttggattccacagacaatcttccagttactattgaa
tttagtgagacagcaaattctgatagaaggaaacctgtgcgtcgatcttctgctgaggat
aaggaattggctgagcttgtgcataaggttcatttgctttgtttgcttgcacgaggcaga
ttaattgacagggcttgtgatgatcctcttattcaggcttctttattttctcttctacca
acacacttgctgaacatatcaaagtccacacatcttactgcaaatgctttgcatcccctt
ctcctttggtttcaaaataacttccgtgttagaagcccaaccagtgcagagaggtcattt
gacttggctttggcctttgctcttgaaactcgagaagggactccggaggagattgttgca
ctatctgtggcactatttagagctttgaatcttacaacccggtttgtgtccattttggat
gtttcttcattaaaaccagatgctgacgagtctgaaactttcagtcaagatgctagcaga
tcgagtaaggggatattcaagacttcaaccccaatggtagctaggccacaacaggattct
gtctctcccattaaatcattttcatgcaatgagagaggcaatatctgtgaaacttctcat
aggggttcatgcaaaagtatggaccgctgctcaacaagcaacatcactcaatccaaagat
tctcctgttattagtgagttggatgataagatgtcagattcattagcttgtgaggcagga
catggtatctctgaaacatgccttaccaagaaatccaagagaccaaagaggaaaggagat
cttgagtttgagatgcagttggaattggctctttctgcgacaacagttgtgactggggag
agcaaaatagagccgattgcgagagatttgaacagtaactcgttgaatttctcttctcct
ctgaaaagaatgaaaagaattgtaagtgaagaatctccaacttcttcccaggcgatttct
actgcagttggctcaagaaaagtaggatctcctttgtattgggcagaagtatactgcaat
ggggaaaacttgacaggaaagtgggtgcatgttgatgttgtcaatgcagttattgatggg
gagcagaaggttgaagctatgtctgctgcatgcaaaacatctttgagatatgtagttgct
tttgctgggcaaggggctaaagacgtgacgcgcaggtattgtttgaagtggtacaaaata
gcatcacggcgagttaattcattttggtgggatgcggtgttggcacgtctgaaagagtta
gaggctggagccactggaggaatggtccatatggaaaagcaacaaattgaggcttcaact
gagcatgagaaagtaaaagcatcaagaaagttggataatccaactctggatgatgttcca
ggcaatgccatatttgggaagtcaagcctggaaatctcaaaagagtatggcaagaagatt
ggtgtagaatcttctcttagcaattcttttgttgctaccaggagcgctcttgaagacatg
gagttggaaactagggcattaactgagcctcttccgaccaatcagcaggcctacaaaaac
catcaactttattgtattgaaagatggcttactaagtatcagatacttcatccaaagggt
cccattctcggtttttgttctggtcatccagtttacccacggaattgtgtgcaaacactc
aagactaaagaaagatggctgcgggaagggctgcaaattaaagctaatgagcttcctgta
aaggagttaaaacgttctataaagcttcagaaagtacaggttcctgaagatgatgagtgt
ggtggggtcaactatgaaggaactattgaactttatggaaagtggcaactagaaccattg
catctgcctcgtgcggttaatggcattgtgccaaagaatgaacgtggtcaagtggaagtt
tggtctgagaagtgcctccctcctgggacggtgcacttgaggttaccgagggtgttttct
gttgccaagagactggagatcgattatgcgcctgccatggttggttttgaattcagaaac
ggacactcgcatcccgtcttcgatggtattgtggtgtgtgctgagttcaaggatgcaata
ttagaggcatatgcagaggaagaagaaagaagagaggccgaagagaagaaaaggaatgaa
acacaagccacttgtaggtggtatcagcttctctgttccatcgtaactaggcaaaggttg
aacaaccgttatggcgacagcttgtcatcacaaacatccactgacatccatgatatgaat
aaaaaattaaatgcatcagtcggtggatgtcaggaagacaagcaatctattgtatgccag
cagcaagaagacatacatcaagctaaggtggatgctccatcggctgccctgcctgaagag
cataagcacgtattcttgacagaggaccagattttcgatgaggagagtttggtgatgata
aagcgatgtcattgtggattttccgtccaagtggaagaattgtaa
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