KEGG   Alnus glutinosa (common alder): 133859395
Entry
133859395         CDS       T10577                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    133859395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aglu03400]
    133859395
DNA repair and recombination proteins [BR:aglu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      133859395
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core
Other DBs
NCBI-GeneID: 133859395
NCBI-ProteinID: XP_062150774
LinkDB
Position
2:complement(30812420..30826761)
AA seq 994 aa
MRTRDGSKRPKQSSGMKNAKKALHDSDSRSRSELLNDSGTLADISQEAVGRLLRRANNRN
SSGKKKRDNNPRQHDSIGTPESGQKKNDKLDVDPGAILSTSKAEGCGRDAIGKTAGEERF
DRGSLQNTLSENREELNDSDWEDGSIPNLDSTDNLPVTIEFSETANSDRRKPVRRSSAED
KELAELVHKVHLLCLLARGRLIDRACDDPLIQASLFSLLPTHLLNISKSTHLTANALHPL
LLWFQNNFRVRSPTSAERSFDLALAFALETREGTPEEIVALSVALFRALNLTTRFVSILD
VSSLKPDADESETFSQDASRSSKGIFKTSTPMVARPQQDSVSPIKSFSCNERGNICETSH
RGSCKSMDRCSTSNITQSKDSPVISELDDKMSDSLACEAGHGISETCLTKKSKRPKRKGD
LEFEMQLELALSATTVVTGESKIEPIARDLNSNSLNFSSPLKRMKRIVSEESPTSSQAIS
TAVGSRKVGSPLYWAEVYCNGENLTGKWVHVDVVNAVIDGEQKVEAMSAACKTSLRYVVA
FAGQGAKDVTRRYCLKWYKIASRRVNSFWWDAVLARLKELEAGATGGMVHMEKQQIEAST
EHEKVKASRKLDNPTLDDVPGNAIFGKSSLEISKEYGKKIGVESSLSNSFVATRSALEDM
ELETRALTEPLPTNQQAYKNHQLYCIERWLTKYQILHPKGPILGFCSGHPVYPRNCVQTL
KTKERWLREGLQIKANELPVKELKRSIKLQKVQVPEDDECGGVNYEGTIELYGKWQLEPL
HLPRAVNGIVPKNERGQVEVWSEKCLPPGTVHLRLPRVFSVAKRLEIDYAPAMVGFEFRN
GHSHPVFDGIVVCAEFKDAILEAYAEEEERREAEEKKRNETQATCRWYQLLCSIVTRQRL
NNRYGDSLSSQTSTDIHDMNKKLNASVGGCQEDKQSIVCQQQEDIHQAKVDAPSAALPEE
HKHVFLTEDQIFDEESLVMIKRCHCGFSVQVEEL
NT seq 2985 nt   +upstreamnt  +downstreamnt
atgcgaacaagggacgggtccaagcgaccgaaacaatcttcaggtatgaaaaatgcaaag
aaagctcttcatgattcagatagcagaagccgttccgagttgctcaatgacagtggaact
cttgctgacatatcacaggaggctgttggcagacttctaagacgtgccaataaccgcaac
tcttctgggaaaaagaaacgtgataataaccccagacaacatgattcaattggcacacca
gagagtgggcaaaaaaaaaatgacaaactagatgtggatccaggagccatattgagtact
tcaaaggctgaaggttgcggtagagatgcaattggaaagactgcaggggaagagagattt
gacaggggaagtttacagaatactctttcagaaaatagggaagaattgaatgactcagat
tgggaagatggttcaattcctaatttggattccacagacaatcttccagttactattgaa
tttagtgagacagcaaattctgatagaaggaaacctgtgcgtcgatcttctgctgaggat
aaggaattggctgagcttgtgcataaggttcatttgctttgtttgcttgcacgaggcaga
ttaattgacagggcttgtgatgatcctcttattcaggcttctttattttctcttctacca
acacacttgctgaacatatcaaagtccacacatcttactgcaaatgctttgcatcccctt
ctcctttggtttcaaaataacttccgtgttagaagcccaaccagtgcagagaggtcattt
gacttggctttggcctttgctcttgaaactcgagaagggactccggaggagattgttgca
ctatctgtggcactatttagagctttgaatcttacaacccggtttgtgtccattttggat
gtttcttcattaaaaccagatgctgacgagtctgaaactttcagtcaagatgctagcaga
tcgagtaaggggatattcaagacttcaaccccaatggtagctaggccacaacaggattct
gtctctcccattaaatcattttcatgcaatgagagaggcaatatctgtgaaacttctcat
aggggttcatgcaaaagtatggaccgctgctcaacaagcaacatcactcaatccaaagat
tctcctgttattagtgagttggatgataagatgtcagattcattagcttgtgaggcagga
catggtatctctgaaacatgccttaccaagaaatccaagagaccaaagaggaaaggagat
cttgagtttgagatgcagttggaattggctctttctgcgacaacagttgtgactggggag
agcaaaatagagccgattgcgagagatttgaacagtaactcgttgaatttctcttctcct
ctgaaaagaatgaaaagaattgtaagtgaagaatctccaacttcttcccaggcgatttct
actgcagttggctcaagaaaagtaggatctcctttgtattgggcagaagtatactgcaat
ggggaaaacttgacaggaaagtgggtgcatgttgatgttgtcaatgcagttattgatggg
gagcagaaggttgaagctatgtctgctgcatgcaaaacatctttgagatatgtagttgct
tttgctgggcaaggggctaaagacgtgacgcgcaggtattgtttgaagtggtacaaaata
gcatcacggcgagttaattcattttggtgggatgcggtgttggcacgtctgaaagagtta
gaggctggagccactggaggaatggtccatatggaaaagcaacaaattgaggcttcaact
gagcatgagaaagtaaaagcatcaagaaagttggataatccaactctggatgatgttcca
ggcaatgccatatttgggaagtcaagcctggaaatctcaaaagagtatggcaagaagatt
ggtgtagaatcttctcttagcaattcttttgttgctaccaggagcgctcttgaagacatg
gagttggaaactagggcattaactgagcctcttccgaccaatcagcaggcctacaaaaac
catcaactttattgtattgaaagatggcttactaagtatcagatacttcatccaaagggt
cccattctcggtttttgttctggtcatccagtttacccacggaattgtgtgcaaacactc
aagactaaagaaagatggctgcgggaagggctgcaaattaaagctaatgagcttcctgta
aaggagttaaaacgttctataaagcttcagaaagtacaggttcctgaagatgatgagtgt
ggtggggtcaactatgaaggaactattgaactttatggaaagtggcaactagaaccattg
catctgcctcgtgcggttaatggcattgtgccaaagaatgaacgtggtcaagtggaagtt
tggtctgagaagtgcctccctcctgggacggtgcacttgaggttaccgagggtgttttct
gttgccaagagactggagatcgattatgcgcctgccatggttggttttgaattcagaaac
ggacactcgcatcccgtcttcgatggtattgtggtgtgtgctgagttcaaggatgcaata
ttagaggcatatgcagaggaagaagaaagaagagaggccgaagagaagaaaaggaatgaa
acacaagccacttgtaggtggtatcagcttctctgttccatcgtaactaggcaaaggttg
aacaaccgttatggcgacagcttgtcatcacaaacatccactgacatccatgatatgaat
aaaaaattaaatgcatcagtcggtggatgtcaggaagacaagcaatctattgtatgccag
cagcaagaagacatacatcaagctaaggtggatgctccatcggctgccctgcctgaagag
cataagcacgtattcttgacagaggaccagattttcgatgaggagagtttggtgatgata
aagcgatgtcattgtggattttccgtccaagtggaagaattgtaa

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