Alnus glutinosa (common alder): 133859620
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Entry
133859620 CDS
T10577
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aglu03036
]
133859620
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
133859620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
133859620
NCBI-ProteinID:
XP_062151070
LinkDB
All DBs
Position
2:33550625..33575860
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AA seq
1817 aa
AA seq
DB search
MSNPIGSDLSSGSSGWGNRGIGLSNTVHSEVAPCLPLPSLPVFCGASDQDLWLFDDPGGG
SLKSLNRSEILAQSIRIADLLRQTDVSYLNLKNDARAAPYGHVEPLELHLQVLQCNPEAF
ECGTAGPIKEQISSSTVSEKKPFKQSVPITSQAQRDYSATQNYHPDYVVPNSVSTPSSRK
PKVRKKGTNDFSSSVGVDPAELQDATIGSFSELMEEFCGRAEIPTDDRDEAEWLSLPLSD
LRMLVNEIMSIRAKKLLHLVPVDILVRLLRVLDHQIHRAEGLSIEDCEHSDSDVVSSIFC
ALESIHAALAVMGNEQMQKQLYKEEIIERILEFSRHQIMDIMCGYDPSYRALHKPSENGE
LEGDEDEELDADFGSASKKRRITKTVKVKKSSLNKVSAAVNTILQKMCTILGLLKDLLLI
ERLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLISGIFYSYTQHRTYVMDEILQLLWKL
PSSKRALRSYHLPEEEQRQIQMVTALLIQLVHCSANLPEALRQVSSGNSILEVSIDCSYP
TKCHEAATEACCLFWTRVLQRFATLKTQDASEMKVMMENLVMDLLTTLNLPEYPASAQVL
EVLCVLLLQNAGLKSKDISARTMAIDLLGTIAARLKRDAVVCRRDKFWVLQELVNADGVD
HRYPKDACSICLDGRVEKLFFICQSCQRLFHADCMGVTEHEVPNRSWQCQICLCRKELLV
LQSYCKSQCKDDGKKSRKYSEKNPEASDPITKVEIVQQLLLNYLQDVGSSDDVHLFVRWF
YLCLWYKDDPKSQEKFIYYLARLKSKAIVRDSGTASSLLTRDSVRKITLALGQNNSFSRG
FDKILHMLLASLRENSPVIRAKALKAVSIIVEADPEVLRDKRVQLAVEGRFCDSAISVRE
AALELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNGNFSEFTSAC
IEIISRVSDDESSIQDLVCKTFYEFWFEEPSGSETQFFGDGSSVPLEVAKKTEQIVEMLR
RMPNHQLLVAVIKRNLALDFFPQSAKAAGINPVSLASVRKRCELMCKCLLEKILQVEEMN
NEEMEVRALPYVLVLHAFCVVDPTLCAPASDPSQFVVTLQPYLKTQVDNRMVAQLLESVI
FIIDSVLPLLRKLPQSVVEELEQDLKHMIVRHSFLTVVHACIKCLCSAGKVAGKGAIVIE
HLIQVFFKRLDAQLVDNKQLVGRSLFCLGLLIRYGKSLLSDHSNKIIDVVGSLGLFKKYL
LVEDFIVKVRSLQALGFVLIGWPEYMLEKDIGKILEATLSSGCDVRIKMQALQNVYEYLL
DAESQMETDKASNNVIHSSVEGGHSVPVAAGAGDTNICGGIVQLYWENILGRCLDFNEQV
RQLALKIVEIVLRQGLVHPITCVPYLIALETDPQEANSKLAHHLLMNMNEKYPAFFESRL
GDGLQKSFIFIQSISGIHENVNLKVQSKIPGNVKGKSDGVSLAQARLGVSRIYKLIRGNR
VSRNKFMSSIVRKFDNPTWNDSIVPFMMYCSEILALLPFTSPDEPLYLIYAINRVIQVRA
GALEAKMKALCMHLSQRYAEKVSYKNGQPGPAVHPDFNEMASMDLNGTIQHEPAGQPIFN
HMMSMDLNESIQQDPADQLVSNHGTSWGEKTRSIGSGVSCVLSEDDVQKVQADCLAAIAL
QLLLKVKRHLKIVYSLNDSRCQAFSPNEPVKPGEVLSRQNISLNIGGTSTSLPTTYQELV
QRYQEFKSSLKEDTVDYSIYTANIKRKRPTPRKGRKPGYMGGEDDEDYNDDEEWTGGVRR
QSNSGRKGNNSRGSRLR
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaattggttccgatttgagctcgggctcctccggctggggcaaccgggga
atcggcctctcgaacaccgtacactcggaggtcgcgccgtgcttgcctttgccttcgctc
ccggtgttctgcggcgcatccgatcaagacctctggctcttcgacgatcctggcggtggt
agcttgaagtcgctgaatcgcagcgagattctcgctcagtctattcgaatcgccgatctg
cttcgccaaacagatgtgtcttacttgaatctaaaaaacgatgcaagggcagctccatat
ggccatgtggagcctttagaactacatctccaagttctacaatgcaatccagaagcattt
gagtgcggtactgcaggtcctattaaggagcaaatctctagcagtacagtatcagaaaag
aagccctttaagcaaagtgtacctattacaagtcaagctcaaagagattatagtgcaact
cagaattatcatcctgactatgttgttcctaatagtgtatcaactccgtcttctagaaaa
ccaaaagtcaggaagaaaggtactaatgatttctcatcatcggttggagtggatcccgct
gagcttcaagacgccaccattgggagctttagtgagttgatggaggagttctgtggcaga
gccgaaattcctactgatgatcgggatgaagcggagtggttatcattgcctctttctgat
cttagaatgcttgtaaatgaaataatgtctatccgtgcaaagaaactcctacatttggtt
cctgtagatattcttgttaggctgttaagggttctagatcatcagatacatcgagcagaa
ggcttgtccattgaagattgcgagcattcagattcagatgtagtttcatcgattttttgt
gctctggagtccattcatgcagctttagcagtaatgggcaatgagcaaatgcaaaagcag
ctttataaagaagagataattgaaagaattctggagttctccaggcatcagataatggat
atcatgtgtggttatgatccatcatatcgtgctttgcataaaccaagtgaaaatggggaa
cttgaaggtgatgaagatgaagagcttgatgctgactttggttcagcaagcaagaagcga
cggattactaagactgttaaagtgaagaaatcgtcattaaacaaggtctccgctgctgtg
aatactattcttcagaaaatgtgcactattcttggtttactcaaggatttgttgttaata
gagaggttatctgatagttgcatcttacaacttgtgaagacgagctttacaacattcttg
gtggataatatccagctcttgcaactgaaagcgattggtttaatcagtgggatattctat
tcgtacactcagcatcgtacttatgtgatggatgaaatacttcagctgctctggaagtta
ccatcctcaaagcgagcactaagatcctatcacctacctgaagaagaacagagacagatt
cagatggtaactgctttgctgattcagttggttcactgtagtgcaaaccttcctgaagct
ttaaggcaggtatcaagtggcaattccatattagaagtctcaattgattgtagttaccca
accaaatgccatgaagcggccacagaggcatgttgtcttttttggacccgtgtgcttcag
cgttttgcaactctgaagactcaagatgcgtctgagatgaaagtaatgatggagaatctt
gttatggatttgctgacaacattgaatttacctgaatatccggcttcagctcaggttttg
gaggttctgtgtgtcttgctactccagaatgctggactgaaatctaaagacatctctgca
cgtacaatggccattgaccttcttggtacaatagcggcgagattgaagcgtgatgctgtc
gtttgcaggagggacaaattttgggtattacaggagttggtcaatgctgatggtgttgac
cacagatatccaaaagatgcatgttctatctgtttggacggaagggttgaaaaattgttc
tttatatgtcaaagttgtcagagattgtttcatgctgattgcatgggagtaacagaacat
gaagttcctaacagaagctggcagtgtcagatttgcctttgcaggaaagaacttctcgta
ttacaatcatattgcaagtcgcagtgcaaggatgatgggaaaaagagtcgcaaatactca
gaaaaaaatcctgaagcctctgatccaattacaaaagttgaaatcgttcaacagttgcta
ctgaattacctccaagatgttggttcttctgatgacgtgcatctctttgttcgctggttt
tatctctgtttgtggtacaaggatgatccaaaatctcaggagaagttcatttactatctt
gctagattaaaatcaaaagcaatagtgcgtgattctggaactgcttcttcattgttgaca
agggattcagtcaggaagattactttggcattgggacaaaataactctttctccagaggg
tttgataagattcttcatatgcttctggcaagtttgagggagaactctcctgtgattcgg
gctaaggctctaaaagcggttagtattattgtagaagctgatcccgaggtattgcgtgat
aaacgtgttcagctggctgttgaaggaaggttttgtgactctgcaatatctgtaagggaa
gcagctttggaacttgtaggcaggcatattgcttcacatcctgatgttggtttgcagtac
tttgagaaggttgctgaaagaatcaaagatactggagtcagtgttcgaaaacgagcgatc
aaaattattcgagatatgtgcacttcaaatggaaacttctctgaatttacgagtgcatgc
attgagatcatttctcgtgttagtgacgatgaatcaagtattcaggatcttgtttgcaag
acattttatgagttctggttcgaggaaccttctggttctgagactcagttttttggagat
ggtagttctgttccactggaggtggctaaaaaaaccgagcagattgttgagatgttgaga
aggatgccaaatcaccaacttcttgtcgctgtcattaagcgcaacttagctcttgatttt
tttccacaatcagctaaagctgctggtatcaaccctgtgtcccttgcatcagtgcgcaag
cgttgtgagttgatgtgcaagtgcttactggaaaagatattgcaggttgaggaaatgaac
aatgaggaaatggaggtgcgtgcacttccttatgtgctggtcttgcatgcattttgtgtt
gtggatccaacgctctgtgcccctgcctctgatccttcacagtttgtggttactttacag
ccatatcttaagactcaggttgataatcgaatggttgctcagttactggagagtgtaatt
tttataattgattctgtgttgccattgcttcgaaaattacctcaaagtgttgttgaagaa
cttgagcaagacttgaagcacatgatcgttcggcattccttcctgacagttgtccatgct
tgcatcaagtgtctttgctctgcgggcaaagttgcaggaaaaggtgctattgtgattgag
catcttattcaggtgttcttcaaacgtttggatgctcagctggttgataacaagcagcta
gtggggcggtcccttttttgccttggattgcttatccgctatggcaaatctttgttgagt
gaccatagtaacaaaattattgatgttgtcggtagtcttggcttgttcaaaaaatatcta
cttgttgaggatttcattgtaaaggttagatcattgcaggcattaggctttgttctaatt
ggttggcctgaatatatgttggaaaaagatattgggaaaatattagaggcaactttgtct
tctggctgtgatgttcgtatcaagatgcaagcattgcaaaacgtgtacgaatatcttctt
gatgcggaaagtcaaatggaaacagataaagcaagtaacaacgtaattcattcttctgta
gaaggtggccacagtgtgcctgttgctgcgggtgcaggagataccaacatatgcgggggt
atagttcagctgtattgggagaatattttaggtagatgtttggacttcaatgaacaagtt
cgccaattggctcttaagatcgttgaaattgtgctgcgccaaggtcttgttcatcctatt
acttgtgtcccataccttattgcacttgaaacagatccacaggaggcgaattcaaagttg
gctcaccatttgctgatgaatatgaatgaaaagtaccctgcattttttgaaagccgtttg
ggggatggccttcaaaaatcattcatttttatacaatccattagtggtattcatgaaaat
gtgaacctgaaagtccaatccaagatcccaggaaatgtgaaggggaaatctgatggtgtc
tctttggctcaagcaagacttggagtttctagaatctacaagctcatccgtggaaaccgg
gtttcaagaaataaattcatgtcctcaattgtgcgaaagtttgataacccaacctggaat
gattctatagtccccttcatgatgtactgttctgaaatacttgctttactaccatttaca
tcacctgatgagccactatatttgatatatgctataaaccgagttatacaagttagggct
ggggcacttgaggcaaaaatgaaagccctgtgtatgcatttgtcacaaagatatgcagag
aaggtatcttataagaatggacaaccagggccagctgttcatcctgatttcaatgagatg
gcttcaatggatttgaatgggacaattcaacatgaaccagctggtcagcctattttcaac
catatgatgtcaatggatttgaatgagagtattcaacaagatccagctgatcagttggtc
tcaaatcatggtacctcttggggggaaaagacgcgcagtatcggctcaggtgtttcttgt
gttctttctgaagatgacgtgcagaaagttcaggctgactgtctggcagctattgcattg
cagcttcttctgaaggtaaagaggcacctaaaaattgtctatagcttgaatgattctcgg
tgccaggcgttttctccaaatgaacctgtaaaaccgggagaggttctctccaggcaaaac
atttcccttaacatcggcggaacatccaccagtttgcctaccacttaccaagaattggta
caaagatatcaggaattcaagagttctctgaaggaagatactgttgattactcgatttat
acagcaaatatcaagaggaagcgccctacacccagaaaagggcggaaacctggatacatg
ggtggtgaggatgatgaagactacaacgatgatgaagagtggacaggtggggttcgcagg
caaagtaatagtggcaggaagggtaacaacagtagaggaagtagactacgataa
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